fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G24260.2 TETNKTLRLRLADGYQ at 168/250 in AT1G24260.1
TETNKTLRLRLADGYQ at 169/251 in AT1G24260.2
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt018991 not found in 245aa AT3G02310.1 1st_not 0.600831600 II
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Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.505)


AT1G24260.2     MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS
pt018991_POPTR_ MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST
                ***********************************************************:

AT1G24260.2     SSMLRTLERYQKCNYGAPEPNVPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGEDL
pt018991_POPTR_ SNMLKTLERYQKCSYGAEEVNKPAKE---LE-SSYREYLKVKARFEALQRTQRNLLGEDL
                *.**:********.*** * * *::*   :* ** :****:* *::**************

AT1G24260.2     GPLSTKELESLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLTETNKTLRLRLADGYQ
pt018991_POPTR_ GPLNTKELEQLERQLESSLNQVRSTKTQYMLDQLADLQNKEHLLLEANRGLTIKL-DEIS
                ***.*****.*****:***:*:*: :**:***** ***.**::* *:*: * ::* *  .

AT1G24260.2     MPLQLNPNQEEVDHYGRHHHQQQQHSQAFFQPLECEPILQIGYQG-QQDGMGAGP----S
pt018991_POPTR_ ARNSLRPSWEGDDQQNMSYGHQHAQSQGLFQALECNPTLQIGYNPVGSDQMTATTHATQQ
                   .*.*. *  *: .  : :*: :**.:**.***:* *****:   .* * * .    .

AT1G24260.2     VNNYMLGWLPYDTNSI
pt018991_POPTR_ VHGFIPGWML------
                *:.:: **:
BoxShade v3.31 C (beta, 970507) Output
AT1G24260.2     M G R G R V E L K R I E N K I N R Q V T F A K R R N G L L K K A Y E L S V L C D A E V A L I I F S N R G K L Y E F C S S
pt018991_POPTR_    M G R G R V E L K R I E N K I N R Q V T F A K R R N G L L K K A Y E L S V L C D A E V A L I I F S N R G K L Y E F C S T
 
AT1G24260.2     S S M L R T L E R Y Q K C N Y G A P E P N V P S R E A L A V E L S S Q Q E Y L K L K E R Y D A L Q R T Q R N L L G E D L
pt018991_POPTR_    S N M L K T L E R Y Q K C S Y G A E E V N K P A K E - - - L E - S S Y R E Y L K V K A R F E A L Q R T Q R N L L G E D L
 
AT1G24260.2     G P L S T K E L E S L E R Q L D S S L K Q I R A L R T Q F M L D Q L N D L Q S K E R M L T E T N K T L R L R L A D G Y Q
pt018991_POPTR_    G P L N T K E L E Q L E R Q L E S S L N Q V R S T K T Q Y M L D Q L A D L Q N K E H L L L E A N R G L T I K L - D E I S
 
AT1G24260.2     M P L Q L N P N Q E E V D H Y G R H H H Q Q Q Q H S Q A F F Q P L E C E P I L Q I G Y Q G - Q Q D G M G A G P - - - - S
pt018991_POPTR_    A R N S L R P S W E G D D Q Q N M S Y G H Q H A Q S Q G L F Q A L E C N P T L Q I G Y N P V G S D Q M T A T T H A T Q Q
 
AT1G24260.2     V N N Y M L G W L P Y D T N S I
pt018991_POPTR_    V H G F I P G W M L - - - - - -
 
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