fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G24260.2 TETNKTLRLRLADGYQ at 168/250 in AT1G24260.1
TETNKTLRLRLADGYQ at 169/251 in AT1G24260.2
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm012471 not found in 242aa AT1G24260.1 1st_not 0.738045738 II
Gm032002 not found in 243aa AT1G24260.2 not_1st 0.721413721 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.505)


AT1G24260.2     MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS
gm032002_Glyma1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKQYEFCSG
gm012471_Glyma0 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS
                ***************************************************** *****.

AT1G24260.2     SSMLRTLERYQKCNYGAPEPNVPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGEDL
gm032002_Glyma1 SSMLKTLERYQKCNYGAPEDNVATNEALVLELSSQQEYLRLKARYEALQRSQRNLMGEDL
gm012471_Glyma0 SSMLKTLERYQKCNYGAPEANVSTREA--LELSSQQEYLKLKARYEALQRSQRNLMGEDL
                ****:************** **.:.**  :*********:** **:****:****:****

AT1G24260.2     GPLSTKELESLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLTETNKTLRLRLADGYQ
gm032002_Glyma1 GPLSSKELESLERQLDSSLKQIRSIRTQFMLDQLSDLQRKEHFLGESNRDLIQR-LEEFQ
gm012471_Glyma0 GPLSSKELESLERQLDSSLKQIRSTRTQFMLDQLSDLQRKEHLLSEANRSLRQRQLEGYQ
                ****:******************: *********.*** **::* *:*: *  *  : :*

AT1G24260.2     M-PLQLNPNQEEVDHYGRHHHQQQQHSQAFFQPLECEPILQIGYQGQQ-DGMGAGPSVNN
gm032002_Glyma1 INPLQLNPSAEEMGH-GR--YPGQPQGHALFQPLDCEPTLQIGYHPDPVSVVSEGPSMNN
gm012471_Glyma0 INPLQLNPGVEEMGY-GR--HPAQTHGEALFQQMECEPTLQIGYQPDPVSVVTAGPSMSN
                : ******. **:.: **  :  * :..*:** ::*** *****: :  . :  ***:.*

AT1G24260.2     YMLGWLPYDTNSI
gm032002_Glyma1 YMAGWLP------
gm012471_Glyma0 YMAGWLP------
                ** ****
BoxShade v3.31 C (beta, 970507) Output
AT1G24260.2     M G R G R V E L K R I E N K I N R Q V T F A K R R N G L L K K A Y E L S V L C D A E V A L I I F S N R G K L Y E F C S S
gm032002_Glyma1    M G R G R V E L K R I E N K I N R Q V T F A K R R N G L L K K A Y E L S V L C D A E V A L I I F S N R G K Q Y E F C S G
gm012471_Glyma0    M G R G R V E L K R I E N K I N R Q V T F A K R R N G L L K K A Y E L S V L C D A E V A L I I F S N R G K L Y E F C S S
 
AT1G24260.2     S S M L R T L E R Y Q K C N Y G A P E P N V P S R E A L A V E L S S Q Q E Y L K L K E R Y D A L Q R T Q R N L L G E D L
gm032002_Glyma1    S S M L K T L E R Y Q K C N Y G A P E D N V A T N E A L V L E L S S Q Q E Y L R L K A R Y E A L Q R S Q R N L M G E D L
gm012471_Glyma0    S S M L K T L E R Y Q K C N Y G A P E A N V S T R E A - - L E L S S Q Q E Y L K L K A R Y E A L Q R S Q R N L M G E D L
 
AT1G24260.2     G P L S T K E L E S L E R Q L D S S L K Q I R A L R T Q F M L D Q L N D L Q S K E R M L T E T N K T L R L R L A D G Y Q
gm032002_Glyma1    G P L S S K E L E S L E R Q L D S S L K Q I R S I R T Q F M L D Q L S D L Q R K E H F L G E S N R D L I Q R - L E E F Q
gm012471_Glyma0    G P L S S K E L E S L E R Q L D S S L K Q I R S T R T Q F M L D Q L S D L Q R K E H L L S E A N R S L R Q R Q L E G Y Q
 
AT1G24260.2     M - P L Q L N P N Q E E V D H Y G R H H H Q Q Q Q H S Q A F F Q P L E C E P I L Q I G Y Q G Q Q - D G M G A G P S V N N
gm032002_Glyma1    I N P L Q L N P S A E E M G H - G R - - Y P G Q P Q G H A L F Q P L D C E P T L Q I G Y H P D P V S V V S E G P S M N N
gm012471_Glyma0    I N P L Q L N P G V E E M G Y - G R - - H P A Q T H G E A L F Q Q M E C E P T L Q I G Y Q P D P V S V V T A G P S M S N
 
AT1G24260.2     Y M L G W L P Y D T N S I
gm032002_Glyma1    Y M A G W L P - - - - - -
gm012471_Glyma0    Y M A G W L P - - - - - -
 
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