fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G45190.1 LPASNQLQLQLGPHSY at 74/229 in AT2G45190.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt010908 MSSSSTLSLDLLPSSE in 6/213 AT2G45190.1 not_1st 0.559819413 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT2G45190.1     MSMSSMSSPSSAVCSPDHFSPSDHLCYVQCNFCQTILAVNVPYTSLFKTVTVRCGCCTNL
pt010908_POPTR_ -----MS--SSSTLSLDLLPSSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNL
                     **  **:. * * :..*::****:**:*:*:***.** ************ ****

AT2G45190.1     LSVNMRSYVLPASNQLQLQLGPHSYFNP-QDILEELRDAPSNMNMMMMNQHPTMNDIPSF
pt010908_POPTR_ LPVNMRGLLLPSANQFHLG---HSFFSPSHNLLDEIPNPTPN---FLINQ-TNVNDFSVP
                *.****. :**::**::*    **:*.* :::*:*: :...*   :::** ..:**:.  

AT2G45190.1     MDLHQQHEIPKAPPVNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNW
pt010908_POPTR_ VRGMADHELPRPPVINRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNW
                :    :**:*:.* :*******************:*************************

AT2G45190.1     AHFPHIHFGLVPDNQPVKKTNMPQQEGEDNMVMKEGFYAPAAANVGV-TPY
pt010908_POPTR_ AHFPHIHFGLMPD-QMVKKTNVRQQEGED-VLMKDGFF--SSANAGVPTPY
                **********:** * *****: ****** ::**:**:  ::**.** ***
BoxShade v3.31 C (beta, 970507) Output
AT2G45190.1     M S M S S M S S P S S A V C S P D H F S P S D H L C Y V Q C N F C Q T I L A V N V P Y T S L F K T V T V R C G C C T N L
pt010908_POPTR_    - - - - - M S - - S S S T L S L D L L P S S E Q L C Y V H C N I C D T V L A V S V P C T S L F K T V T V R C G H C T N L
 
AT2G45190.1     L S V N M R S Y V L P A S N Q L Q L Q L G P H S Y F N P - Q D I L E E L R D A P S N M N M M M M N Q H P T M N D I P S F
pt010908_POPTR_    L P V N M R G L L L P S A N Q F H L G - - - H S F F S P S H N L L D E I P N P T P N - - - F L I N Q - T N V N D F S V P
 
AT2G45190.1     M D L H Q Q H E I P K A P P V N R P P E K R Q R V P S A Y N R F I K E E I Q R I K A G N P D I S H R E A F S A A A K N W
pt010908_POPTR_    V R G M A D H E L P R P P V I N R P P E K R Q R V P S A Y N R F I K D E I Q R I K A G N P D I S H R E A F S A A A K N W
 
AT2G45190.1     A H F P H I H F G L V P D N Q P V K K T N M P Q Q E G E D N M V M K E G F Y A P A A A N V G V - T P Y
pt010908_POPTR_    A H F P H I H F G L M P D - Q M V K K T N V R Q Q E G E D - V L M K D G F F - - S S A N A G V P T P Y
 
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