fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G11090.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pp003079 not found in 235aa AT3G27650.1 1st_not 0.429003021 II
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Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G11090.1     MRGHEPRSSSSCAACKLLKRRCTPTCIFAPYFRSSDLITFAKVHKVFGASNVSKLLGEVP
pp003079_Pp1s71 ---MASSSSSPCAACKFLRRKCTAECVFAPYFPPDQPHKFANVHKIFGASNITKLLNELP
                     . ***.*****:*:*:**. *:***** ..:  .**:***:*****::***.*:*

AT3G11090.1     EEQRQETVNSLAYEAEVRLKDPVYGCIGAIASLQKKMLELQHDLAVARTRLLAHSGVNNS
pp003079_Pp1s71 THQREDAVNSLAYEADARVKDPVYGCVGAISVLQRQVAQLQNDLAIAHSDLARYAGA--G
                 .**:::********:.*:*******:***: **::: :**:***:*:: *  ::*.  .

AT3G11090.1     QVSPLDDSPELAAFLDLVPYSDLMLLDGSTNLD-----AYLYDL--GQPPFV--------
pp003079_Pp1s71 MVVPSVGQGGASSSLGI----GISLSQGQANREHMLTREQLMDLARGDPSHLSREHLMEL
                 * *  ..   :: *.:    .: * :*.:* :       * **  *:*..:        

AT3G11090.1     ------------------------------------------------------------
pp003079_Pp1s71 ARAGGGTYETLQALGLSGALGPLRSFPSNSRSGGESGNRSGGGSGGGGGGGASASNTGGQ
                                                                            

AT3G11090.1     ----
pp003079_Pp1s71 IPSP
BoxShade v3.31 C (beta, 970507) Output
AT3G11090.1     M R G H E P R S S S S C A A C K L L K R R C T P T C I F A P Y F R S S D L I T F A K V H K V F G A S N V S K L L G E V P
pp003079_Pp1s71    - - - M A S S S S S P C A A C K F L R R K C T A E C V F A P Y F P P D Q P H K F A N V H K I F G A S N I T K L L N E L P
 
AT3G11090.1     E E Q R Q E T V N S L A Y E A E V R L K D P V Y G C I G A I A S L Q K K M L E L Q H D L A V A R T R L L A H S G V N N S
pp003079_Pp1s71    T H Q R E D A V N S L A Y E A D A R V K D P V Y G C V G A I S V L Q R Q V A Q L Q N D L A I A H S D L A R Y A G A - - G
 
AT3G11090.1     Q V S P L D D S P E L A A F L D L V P Y S D L M L L D G S T N L D - - - - - A Y L Y D L - - G Q P P F V - - - - - - - -
pp003079_Pp1s71    M V V P S V G Q G G A S S S L G I - - - - G I S L S Q G Q A N R E H M L T R E Q L M D L A R G D P S H L S R E H L M E L
 
AT3G11090.1     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
pp003079_Pp1s71    A R A G G G T Y E T L Q A L G L S G A L G P L R S F P S N S R S G G E S G N R S G G G S G G G G G G G A S A S N T G G Q
 
AT3G11090.1     - - - -
pp003079_Pp1s71    I P S P
 
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