|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT2G42830 | AGL5, SHP2 | SHATTERPROOF 2, AGAMOUS-like 5, K-box region and MADS-box transcription factor family protein (.1.2) |
>AT2G42830.2 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRV, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SalI, SmaI, SpeI, StyI, XbaI
| Name | Recognition sequence | Cut positions |
| EcoRI | G|AATTC | 705 |
| HindIII | A|AGCTT | 137, 257 |
| HpaI | GTT|AAC | 274, 682 |
| SacI | GAGCT|C | 145 |
| XhoI | C|TCGAG | 194 |
Click here to view TAIR data
>AT2G42830.2 length:747
ATGGAGGGTG GTGCGAGTAA TGAAGTAGCA GAGAGCAGCA AGAAGATAGG | 50 |
GAGAGGGAAG ATAGAGATAA AGAGGATAGA GAACACTACG AATCGTCAAG | 100 |
TCACTTTCTG CAAACGACGC AATGGTTTAC TCAAGAAAGC TTATGAGCTC | 150 |
TCTGTCTTGT GTGACGCTGA GGTTGCTCTT GTCATCTTCT CCACTCGAGG | 200 |
CCGTCTCTAC GAGTACGCCA ACAACAGTGT GAGAGGAACA ATAGAAAGGT | 250 |
ACAAGAAAGC TTGCTCCGAC GCCGTTAACC CTCCGACCAT CACCGAAGCT | 300 |
AATACTCAGT ACTATCAGCA AGAGGCGTCT AAACTCCGGA GACAGATTCG | 350 |
GGACATTCAG AATTTGAACA GACACATTCT TGGTGAATCT CTTGGTTCCT | 400 |
TGAACTTTAA GGAACTCAAG AACCTTGAAA GTAGGCTTGA GAAAGGAATC | 450 |
AGTCGTGTCC GATCCAAGAA GCACGAGATG TTAGTTGCAG AGATTGAATA | 500 |
CATGCAAAAA AGGGTAAAAG AAATCGAGCT GCAAAACGAT AACATGTATC | 550 |
TCCGCTCCAA GATTACTGAA AGAACAGGTC TACAGCAACA AGAATCGAGT | 600 |
GTGATACATC AAGGGACAGT TTACGAGTCG GGTGTTACTT CTTCTCACCA | 650 |
GTCGGGGCAG TATAACCGGA ATTATATTGC GGTTAACCTT CTTGAACCGA | 700 |
ATCAGAATTC CTCCAACCAA GACCAACCAC CTCTGCAACT TGTTTGA | 750 |
>AT2G42830.2 longest ORF length:248
MEGGASNEVA ESSKKIGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL | 50 |
SVLCDAEVAL VIFSTRGRLY EYANNSVRGT IERYKKACSD AVNPPTITEA | 100 |
NTQYYQQEAS KLRRQIRDIQ NLNRHILGES LGSLNFKELK NLESRLEKGI | 150 |
SRVRSKKHEM LVAEIEYMQK RVKEIELQND NMYLRSKITE RTGLQQQESS | 200 |
VIHQGTVYES GVTSSHQSGQ YNRNYIAVNL LEPNQNSSNQ DQPPLQLV | 250 |