fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G54340 AP3, ATAP3 APETALA 3, K-box region and MADS-box transcription factor family protein (.1)

>AT3G54340.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRI, EcoRV, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, PvuII, SalI, SmaI, XbaI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 204
HindIII A|AGCTT 157
NcoI C|CATGG 642
SacI GAGCT|C 100
SpeI A|CTAGT 534
StyI C|C[AT][AT]GG 642


Click here to view TAIR data

>AT3G54340.1 length:699
ATGGCGAGAG GGAAGATCCA GATCAAGAGG ATAGAGAACC AGACAAACAG 
50
ACAAGTGACG TATTCAAAGA GAAGAAATGG TTTATTCAAG AAAGCACATG 
100
AGCTCACGGT TTTGTGTGAT GCTAGGGTTT CGATTATCAT GTTCTCTAGC 
150
TCCAACAAGC TTCATGAGTA TATCAGCCCT AACACCACAA CGAAGGAGAT 
200
CGTAGATCTG TACCAAACTA TTTCTGATGT CGATGTTTGG GCCACTCAAT 
250
ATGAGCGAAT GCAAGAAACC AAGAGGAAAC TGTTGGAGAC AAATAGAAAT 
300
CTCCGGACTC AGATCAAGCA GAGGCTAGGT GAGTGTTTGG ACGAGCTTGA 
350
CATTCAGGAG CTGCGTCGTC TTGAGGATGA AATGGAAAAC ACTTTCAAAC 
400
TCGTTCGCGA GCGCAAGTTC AAATCTCTTG GGAATCAGAT CGAGACCACC 
450
AAGAAAAAGA ACAAAAGTCA ACAAGACATA CAAAAGAATC TCATACATGA 
500
GCTGGAACTA AGAGCTGAAG ATCCTCACTA TGGACTAGTA GACAATGGAG 
550
GAGATTACGA CTCAGTTCTT GGATACCAAA TCGAAGGGTC ACGTGCTTAC 
600
GCTCTTCGTT TCCACCAGAA CCATCACCAC TATTACCCCA ACCATGGCCT 
650
TCATGCACCC TCTGCCTCTG ACATCATTAC CTTCCATCTT CTTGAATAA
700

>AT3G54340.1 longest ORF length:232
MARGKIQIKR IENQTNRQVT YSKRRNGLFK KAHELTVLCD ARVSIIMFSS 
50
SNKLHEYISP NTTTKEIVDL YQTISDVDVW ATQYERMQET KRKLLETNRN 
100
LRTQIKQRLG ECLDELDIQE LRRLEDEMEN TFKLVRERKF KSLGNQIETT 
150
KKKNKSQQDI QKNLIHELEL RAEDPHYGLV DNGGDYDSVL GYQIEGSRAY 
200
ALRFHQNHHH YYPNHGLHAP SASDIITFHL LE
250