|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT4G13040 | Integrase-type DNA-binding superfamily protein (.1.2.3) |
>AT4G13040.3 CDS map
>>Show genomic map
Uncut enzymes: AatII, Acc65I, AccII(FnuDII), AccIII(BspMII), AclI, AfeI, AflII, AflIII, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvrII, BaeI, BalI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BfaI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BslI, BsmAI, BsmBI, BsmFI, BsmI, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrGI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstF5I, BstNI, BstUI, BstXI, BstYI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HincII, HindIII, HpaI, HphI, Hpy99I, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MslI, MspA1I, NaeI, , NarI, NcoI, NgoMIV, NheI, NotI, NruI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PspGI, PspOMI, PstI, PvuI, PvuII, RsrII, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SnaBI, SpeI, SspI, StuI, StyI, SwaI, TliI, Tth111I, XbaI, XhoI, XmnI
| Name | Recognition sequence | Cut positions |
| AccI | GT|[AC][TG]AC | 418 |
| AciI | C|CGC | 347, 444 |
| AgeI | A|CCGGT | 312 |
| AluI | AG|CT | 65, 184, 558, 596 |
| AvaI | C|PyCGPuG | 196 |
| AvaII | G|G[AT]CC | 102 |
| BanII | GPuGCPy|C | 559 |
| BclI | T|GATCA | 152 |
| BsaJI | C|CNNGG | 196 |
| BsaWI | [AT]|CCGG[AT] | 312 |
| BsiHKAI | G[AT]GC[AT]|C | 559 |
| BsoBI | C|PyCGPuG | 196 |
| Bsp1286I | G[GAT]GC[CAT]|C | 559 |
| BsrFI | Pu|CCGGPy | 312 |
| BsrI | ACTGGN| | 157 |
| BssKI | |CCNGG | 195 |
| Cac8I | GCN|NGC | 201, 441, 508, 688 |
| Cfr10I | [AG]|CCGG[TC] | 312 |
| DdeI | C|TNAG | 142, 476 |
| DpnI | GA-CH3|TC | 151, 679 |
| DpnII | |GATC | 151, 679 |
| EcoRV | GAT|ATC | 304 |
| Fnu4HI | GC|NGC | 183, 347, 365, 444, 504, 525 |
| HaeIII | GG|CC | 198 |
| HinfI | G|ANTC | 4, 161, 324, 415, 723 |
| HpaII | C|CGG | 195, 311 |
| Hpy188I | TCN|GA | 48, 291, 300, 321, 564, 726 |
| HpyCH4III | ACN|GT | 210, 219 |
| HpyCH4IV | A|CGT | 76 |
| HpyCH4V | TG|CA | 279, 617 |
| MboI | |GATC | 151, 679 |
| MseI | T|TAA | 134, 315, 450 |
| MspI | C|CGG | 195, 311 |
| MwoI | GCNNNNN|NNGC | 183 |
| N.BstNBI | GAGTCNNNN|N | 420 |
| NciI | CC|[CG]GG | 195 |
| NdeI | CA|TATG | 277 |
| NlaIII | CATG| | 8, 399, 430, 532, 665, 691 |
| NlaIV | GGN|NCC | 546 |
| NsiI | ATGCA|T | 280 |
| NspI | PuCATG|Py | 692 |
| PsiI | TTA|TAA | 189 |
| RsaI | GT|AC | 383 |
| SacI | GAGCT|C | 559 |
| Sau3AI | |GATC | 151, 679 |
| Sau96I | G|GNCC | 102, 198 |
| ScrFI | CC|NGG | 195 |
| SmaI | CCC|GGG | 196 |
| SmlI | C|TPyPuAG | 494 |
| SphI | GCATG|C | 692 |
| Taqƒ¿I | T|CGA | 54, 456 |
| TfiI | G|A[AT]TC | 4, 161, 324, 723 |
| TseI | G|C[AT]GC | 183, 365, 504, 525 |
| Tsp45I | |GT[CG]AC | 117 |
| Tsp509I | |AATT | 317, 614, 631 |
| TspRI | NNCA[CG]TGNN| | 157 |
| XcmI | CCANNNNN|NNNNTGG | 18 |
| XmaI | C|CCGGG | 196 |
Click here to view TAIR data
>AT4G13040.3 length:741
ATGAGAATCC ATGAAAAAGG TGGCGGTGGT AGGAGAAAAG TAAAACATTC | 50 |
AGAAGTCGAT ATGGTGAGCT TACGAAGACG TAGGCTATTG GGTCTTTGTT | 100 |
GTGGACCAAA TGGTTATGTG ACACCACTTC CATTTTTAAC TGCTGAGGAG | 150 |
ATGATCACTG GGATTCCAAA TCCTAATGCC AGAGCAGCTT ATAATCCCGG | 200 |
GCCAGCAGAA ACGGTTACAA CGGTTATCGT GGAGAAAAAG GCTATTGAAG | 250 |
AAAGAAGCCG AAGAACTCGG TCAAAACATA TGCATTTCAG GTCTGATTAT | 300 |
TCAGATATCT CACCGGTTAA TTCTGATTCC ATCTCACCAA AATACCAGCC | 350 |
GCCGAAACGA AGAAAGCAGC ATAGAAGAAA GCGAGTACAT AACCAAGAAC | 400 |
CATGTTTGAT GAGAGGAGTC TACTACAAAA ACATGAAATG GCAAGCCGCC | 450 |
ATTAAAGTCG AGAAGAAACA AATCCACTTA GGCACTTTCT CTTCTCAAGA | 500 |
AGAGGCTGCT CGCTTATACG ATAGGGCTGC TTTCATGTGT GGGAGGGAAC | 550 |
CGAACTTTGA GCTCTCGGAA GAAGTTATAC GAGAACTCAA ACAGCAAAGC | 600 |
TGGGAAGAGT TCTTGAATTG CACACGCCGA ACAATTACGA ACAAAAAACC | 650 |
AAAGAGTAGG ATAGAACATG AGGATACGAA GATCAATGCC AGCATGCCAC | 700 |
ATCAACCAGA AGAAGAAGAG CAAGATTCAG ACAAAATGTG A | 750 |
>AT4G13040.3 longest ORF length:246
MRIHEKGGGG RRKVKHSEVD MVSLRRRRLL GLCCGPNGYV TPLPFLTAEE | 50 |
MITGIPNPNA RAAYNPGPAE TVTTVIVEKK AIEERSRRTR SKHMHFRSDY | 100 |
SDISPVNSDS ISPKYQPPKR RKQHRRKRVH NQEPCLMRGV YYKNMKWQAA | 150 |
IKVEKKQIHL GTFSSQEEAA RLYDRAAFMC GREPNFELSE EVIRELKQQS | 200 |
WEEFLNCTRR TITNKKPKSR IEHEDTKINA SMPHQPEEEE QDSDKM | 250 |