fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT4G27330 NZZ, SPL NOZZLE, sporocyteless (SPL) (.1)

>AT4G27330.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccII(FnuDII), AfeI, AflII, AhdI, AlwI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AvrII, BaeI, BalI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrGI, BsrI, BssHII, BssSI, BstAPI, BstEII, BstUI, BstXI, BstZ17I, Bsu36I, BtsI, Cac8I, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HhaI, HinP1I, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MslI, MspA1I, NaeI, , NarI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PstI, PvuI, PvuII, RsrII, SacII, SalI, SapI, SbfI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, Tth111I, XbaI, XcmI, XmnI
Name Recognition sequence Cut positions
AccI GT|[AC][TG]AC 316
AccIII(BspMII) T|CCGGA 104
AciI C|CGC 243
AclI AA|CGTT 177, 536
AflIII A|CPuPyGT 263
AgeI A|CCGGT 312
AluI AG|CT 89, 201, 347, 459, 700, 785, 936
AlwNI CAGNNN|CTG 710
ApoI Pu|AATTPy 778
AseI AT|TAAT 730
AvaI C|PyCGPuG 205, 321, 355
AvaII G|G[AT]CC 765
BanII GPuGCPy|C 460
BclI T|GATCA 549, 681
BfaI C|TAG 693, 717, 804
BsaBI GATNN|NNATC 548, 632, 653
BsaJI C|CNNGG 321, 424, 666, 847
BsaWI [AT]|CCGG[AT] 104, 312
BsiHKAI G[AT]GC[AT]|C 460
BslI CCNNNNN|NNGG 618, 810
BsoBI C|PyCGPuG 205, 321, 355
Bsp1286I G[GAT]GC[CAT]|C 460
BspDI AT|CGAT 279
BspEI T|CCGGA 104
BspHI T|CATGA 456
BsrFI Pu|CCGGPy 312
BssKI |CCNGG 138, 320, 410, 846
BstBI TT|CGAA 588
BstF5I GGATGNN| 544
BstNI CC|[AT]GG 138
BstYI Pu|GATCPy 101, 368
BtgI C|CPuPyGG 424
BtrI CAC|GTC 264
Cfr10I [AG]|CCGG[TC] 312
ClaI AT|CGAT 279
DdeI C|TNAG 63
DpnI GA-CH3|TC 29, 56, 100, 141, 280, 367, 403, 548, 567, 626, 647, 680, 813
DpnII |GATC 29, 56, 100, 141, 280, 367, 403, 548, 567, 626, 647, 680, 813
Fnu4HI GC|NGC 243, 699
HincII GTPy|PuAC 24, 85
HindIII A|AGCTT 937
HinfI G|ANTC 122, 217, 382, 602, 688
HpaII C|CGG 93, 103, 311, 320, 410, 845
Hpy188I TCN|GA 43, 62, 131, 212, 256, 551, 611, 645, 656
Hpy99I CG[AT]CG| 41, 886
HpyCH4III ACN|GT 252, 574
HpyCH4IV A|CGT 176, 263, 535, 884
HpyCH4V TG|CA 905
MboI |GATC 29, 56, 100, 141, 280, 367, 403, 548, 567, 626, 647, 680, 813
MseI T|TAA 489, 729, 940
MspI C|CGG 93, 103, 311, 320, 410, 845
MwoI GCNNNNN|NNGC 346, 699
N.BstNBI GAGTCNNNN|N 127, 387
NciI CC|[CG]GG 320, 410, 846
NcoI C|CATGG 424
NlaIII CATG| 19, 423, 455, 790
NlaIV GGN|NCC 662, 765
PaeR7I C|TCGAG 205
PspGI |CC[AT]GG 138
RsaI GT|AC 308, 720, 832
SacI GAGCT|C 460
Sau3AI |GATC 29, 56, 100, 141, 280, 367, 403, 548, 567, 626, 647, 680, 813
Sau96I G|GNCC 765
ScaI AGT|ACT 721
ScrFI CC|NGG 138, 320, 410, 846
SmaI CCC|GGG 321
SmlI C|TPyPuAG 205
StyI C|C[AT][AT]GG 424, 666
Taqƒ¿I T|CGA 143, 204, 219, 278, 405, 565, 587
TfiI G|A[AT]TC 217, 602, 688
TliI C|TCGAG 205
TseI G|C[AT]GC 699
Tsp45I |GT[CG]AC 514, 890
Tsp509I |AATT 777
TspRI NNCA[CG]TGNN| 117, 873
XhoI C|TCGAG 205
XmaI C|CCGGG 321


Click here to view TAIR data

>AT4G27330.1 length:945
ATGGCGACTT CTCTCTTCTT CATGTCAACA GATCAAAACT CCGTCGGAAA 
50
CCCAAACGAT CTTCTGAGAA ACACCCGTCT TGTCGTCAAC AGCTCCGGCG 
100
AGATCCGGAC AGAGACACTG AAGAGTCGTG GTCGGAAACC AGGATCGAAG 
150
ACAGGTCAGC AAAAACAGAA GAAACCAACG TTGAGAGGAA TGGGTGTAGC 
200
AAAGCTCGAG CGTCAGAGAA TCGAAGAAGA AAAGAAGCAA CTCGCCGCCG 
250
CCACAGTCGG AGACACGTCA TCAGTAGCAT CGATCTCTAA CAACGCTACC 
300
CGTTTACCCG TACCGGTAGA CCCGGGTGTT GTGCTACAAG GCTTCCCAAG 
350
CTCACTCGGG AGCAACAGGA TCTATTGTGG TGGAGTCGGG TCGGGTCAGG 
400
TTATGATCGA CCCGGTTATT TCTCCATGGG GTTTTGTTGA GACCTCCTCC 
450
ACTACTCATG AGCTCTCTTC AATCTCAAAT CCTCAAATGT TTAACGCTTC 
500
TTCCAATAAT CGCTGTGACA CTTGCTTCAA GAAGAAACGT TTGGATGGTG 
550
ATCAGAATAA TGTAGTTCGA TCCAACGGTG GTGGATTTTC GAAATACACA 
600
ATGATTCCTC CTCCGATGAA CGGCTACGAT CAGTATCTTC TTCAATCAGA 
650
TCATCATCAG AGGAGCCAAG GTTTCCTTTA TGATCATAGA ATCGCTAGAG 
700
CAGCTTCAGT TTCTGCTTCT AGTACTACTA TTAATCCTTA TTTCAACGAG 
750
GCAACAAATC ATACGGGACC AATGGAGGAA TTTGGGAGCT ACATGGAAGG 
800
AAACCCTAGA AATGGATCAG GAGGTGTGAA GGAGTACGAG TTTTTTCCGG 
850
GGAAATATGG TGAAAGAGTT TCAGTGGTGG CTAAAACGTC GTCACTCGTA 
900
GGTGATTGCA GTCCTAATAC CATTGATTTG TCCTTGAAGC TTTAA
950

>AT4G27330.1 longest ORF length:314
MATSLFFMST DQNSVGNPND LLRNTRLVVN SSGEIRTETL KSRGRKPGSK 
50
TGQQKQKKPT LRGMGVAKLE RQRIEEEKKQ LAAATVGDTS SVASISNNAT 
100
RLPVPVDPGV VLQGFPSSLG SNRIYCGGVG SGQVMIDPVI SPWGFVETSS 
150
TTHELSSISN PQMFNASSNN RCDTCFKKKR LDGDQNNVVR SNGGGFSKYT 
200
MIPPPMNGYD QYLLQSDHHQ RSQGFLYDHR IARAASVSAS STTINPYFNE 
250
ATNHTGPMEE FGSYMEGNPR NGSGGVKEYE FFPGKYGERV SVVAKTSSLV 
300
GDCSPNTIDL SLKL
350