fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G60970 TCP5 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 (.1)

>AT5G60970.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRV, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
EcoRI G|AATTC 954
SacI GAGCT|C 861, 1029
StyI C|C[AT][AT]GG 699


Click here to view TAIR data

>AT5G60970.1 length:1083
ATGAGATCAG GAGAATGTGA TGAAGAGGAG ATTCAAGCAA AGCAAGAAAG 
50
AGATCAAAAT CAAAATCATC AAGTAAACTT AAACCACATG TTGCAACAAC 
100
AACAGCCGAG TTCGGTATCA TCTTCAAGGC AATGGACTTC AGCTTTTAGG 
150
AATCCAAGAA TCGTTCGAGT CTCAAGAACA TTCGGTGGCA AAGACAGACA 
200
CAGCAAAGTA TGTACAGTCC GTGGTCTTCG AGACCGGAGG ATAAGGTTGT 
250
CCGTACCTAC AGCTATTCAA CTCTACGACC TTCAAGATCG ATTAGGGCTG 
300
AGTCAGCCAA GCAAAGTCAT TGATTGGTTA CTCGAAGCAG CAAAAGATGA 
350
CGTAGACAAG CTACCTCCTC TACAATTCCC ACATGGATTT AACCAGATGT 
400
ATCCAAATCT CATCTTCGGA AACTCCGGGT TTGGAGAATC TCCATCTTCA 
450
ACTACATCAA CAACGTTTCC AGGAACCAAT CTCGGGTTCT TGGAAAATTG 
500
GGATCTTGGT GGTTCTTCAA GAACAAGAGC AAGATTAACC GATACAACTA 
550
CGACCCAAAG AGAAAGTTTT GATCTTGATA AAGGAAAATG GATCAAAAAC 
600
GACGAGAATA GTAATCAAGA TCATCAAGGG TTTAACACCA ATCATCAACA 
650
ACAATTTCCT CTGACCAATC CGTACAACAA CACTTCAGCT TATTACAACC 
700
TTGGACATCT TCAACAATCG TTAGACCAAT CTGGTAATAA CGTTACTGTC 
750
GCAATATCTA ATGTTGCTGC TAATAATAAC AATAATCTCA ATTTGCATCC 
800
TCCTTCCTCG TCTGCCGGAG ATGGATCTCA GCTTTTTTTC GGTCCTACTC 
850
CTCCGGCAAT GAGCTCTCTA TTCCCGACAT ACCCTTCGTT TCTTGGAGCT 
900
TCTCATCATC ATCATGTCGT CGATGGAGCC GGTCATCTTC AGCTCTTTAG 
950
CTCGAATTCA AATACCGCAT CGCAGCAACA CATGATGCCG GGTAATACGA 
1000
GTTTGATTAG ACCATTTCAT CATTTGATGA GCTCGAATCA TGATACGGAT 
1050
CATCATAGTA GCGATAATGA ATCAGATTCT TGA
1100

>AT5G60970.1 longest ORF length:360
MRSGECDEEE IQAKQERDQN QNHQVNLNHM LQQQQPSSVS SSRQWTSAFR 
50
NPRIVRVSRT FGGKDRHSKV CTVRGLRDRR IRLSVPTAIQ LYDLQDRLGL 
100
SQPSKVIDWL LEAAKDDVDK LPPLQFPHGF NQMYPNLIFG NSGFGESPSS 
150
TTSTTFPGTN LGFLENWDLG GSSRTRARLT DTTTTQRESF DLDKGKWIKN 
200
DENSNQDHQG FNTNHQQQFP LTNPYNNTSA YYNLGHLQQS LDQSGNNVTV 
250
AISNVAANNN NNLNLHPPSS SAGDGSQLFF GPTPPAMSSL FPTYPSFLGA 
300
SHHHHVVDGA GHLQLFSSNS NTASQQHMMP GNTSLIRPFH HLMSSNHDTD 
350
HHSSDNESDS 
400