fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT4G18960 (AG)

Alias AG
TF Classification
FioreDBMADS (Click to show phylogenetic tree)
RARTFMADS / AGAMOUS
AtTFDBMADS / TypeII
PlnTFDBMADS (v3.0), MADS (v1.0)
DATFMADS
TAIR short description AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2)
TAIR annotation Floral homeotic gene encoding a MADS domain transcription factor. Specifies floral meristem and carpel and stamen identity. Binds CArG box sequences. It is the only C function gene. It interacts genetically with the other homeotic genes to specify the floral organs. (.1.2)
Gene model
Gene model cDNA support
AT4G18960.1 14
AT4G18960.2 6
Entry clone (w/o stop) RE_1287_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 30154: other cellular processes ->cell differentiation
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 45944: other metabolic processes ->positive regulation of transcription from RNA polymerase II promoter
(F) 46983: protein binding ->protein dimerization activity
(P) 48366: developmental processes ->leaf development
(P) 48440: developmental processes ->carpel development
(P) 48443: developmental processes ->stamen development
(P) 48497: developmental processes ->maintenance of floral organ identity
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(F) 977: nucleic acid binding ->RNA polymerase II regulatory region sequence-specific DNA binding
(P) 9908: developmental processes ->flower development
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1 3 5
soybean 1 2 15 18
rice 1 2 3
sorghum 1 1 1 3
physcomitrella
Total 4 4 21 29
Repression motif
Repression motif
in putative orthologs
        
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
View all photo
agamous-like
abnormal petal (direct input), embryonic lethal (A20568), abnormal carpel (direct input, A20568), early flowering (A20568), abnormal stamen (direct input), abnormal flower (direct input, A20568)
CRES-T phenotype from publication abnormal stamen, abnormal carpel, abnormal flower (PMID12787253)
CRES-T phenotype from bulk project
Phenotype in ornamental plants

ID Species Construct Date Comment Phenotype Photo
ID15 Gentiana AtACT2pro:AtCDS-SRDX 2005-06-20   no phenotype Experiments with GtUBQ2pro:AtCDS-SRDX and rolCproo:AtCDS-SRDX is running now.   
ID17 Pharbitis 35S:AtCDS-SRDX 2005-07-28 ap3 like?  extra short green petals and projecting carpel  
[Publication link]
and more...
ID61 Chrysanthemum 35S:AtCDS-SRDX 2005-10-24   late flowering, defect of floral development 
ID50008 Torenia 35S:AtCDS-SRDX 2005-10-24   serrated petal edge, anthocyanin accumulation of stigma surface  
[Publication link]
and more...
ID14 Cyclamen 35S:AtCDS-SRDX 2005-06-20   no phenotype   
ID50060 Pharbitis 35S:GAL4UAS::DPSRDX:Alc pro::GAL4SRDX 2010-09-08 induced exp of PnOrtholog-SRDX  double petals 
[Publication link]
and more...
ID50059 Cyclamen 35S:CpOrtholog2-SRDX / cportholog1 mutant 2010-09-08   More than 50 petals were generated. 
[Publication link]
and more...
ID50058 Cyclamen 35S:CpOrtholog1-SRDX 2010-09-08   10 petals 
[Publication link]
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