Code name | IE_0044 | |||
---|---|---|---|---|
Locus | AT2G01200 | |||
Template | IT_0044 (total cDNA) | |||
Donor Vector | pDONR207 | |||
Forward primer | 8410 (GGGGACAAGTTTGTACAAAAAAGCAGGCTCCATGGACCCAAACACACCTGCAGAC) | |||
Reverse primer | 8411 (GGGGACCACTTTGTACAAGAAAGCTGGGTCAAAGGGAAGAAGAGCATCGTTTCTT) | |||
Alignment with template seq. | 1st | - | 2nd | - |
Alignment with TAIR7CDS | アミノ酸配列corresponding:kigoshi一致 | - | ||
comment | AT2G01200.2, Splicing variant: IE_0045 | |||
sequence |
>IE_0044_573bp ATGGACCCAAACACACCTGCAGACTTCTTCAAAGGTTCTTCCAAGTTTCATACATATTACTCACAGACCAAAAAGGGTGGTGGGGTAATCGATCTAGGCC TCAGCCTTAGGACCATACAACATGAAACTTACCTCCCACCGGCGCGAATGATAGGTCTCGACGGGTATGGAGAGCTCATAGACTGGTCGCAGCCCAGCTA TAACAGCATTACACAGTTGAAGAGTGAGGACACTGGACACCAAAGACTTGCCCAAGGATATTACAATAATGAAGGAGAGAGCAGAGGAAAATATGCTTAC GTAAAGGTAAATCTGGATGGCCTAGTGGTAGGGCGCAAGGTTTGCCTTGTTGATCAAGGAGCTTACGCAACTCTTGCTCTTCAGCTCAATGATATGTTTG GGATGCAGACCGTGTCGGGATTGAGGTTGTTCCAGACTGAGTCTGAGTTCTCTTTGGTCTACAGAGACAGAGAAGGCATTTGGAGGAATGTTGGGGATGT TCCATGGAAGGAGTTTGTCGAAAGCGTGGATCGGATGCGAATCGCAAGAAGAAACGATGCTCTTCTTCCCTTT >IE_0044_translated MDPNTPADFFKGSSKFHTYYSQTKKGGGVIDLGLSLRTIQHETYLPPARMIGLDGYGELIDWSQPSYNSITQLKSEDTGHQRLAQGYYNNEGESRGKYAY VKVNLDGLVVGRKVCLVDQGAYATLALQLNDMFGMQTVSGLRLFQTESEFSLVYRDREGIWRNVGDVPWKEFVESVDRMRIARRNDALLPF |
|||
Alignment |
◆CDS(TAIRver.9)_without_stop_codonとのalignment◆ 429/573 (74.9%)(アミノ酸配列で135/194 (69.6%))一致しました。 10 20 30 40 50 60 70 80 90 100 AT2G01 ATGGACCCAAACACACCTGCAGACTTCTTCAAAGGTTCTTCCAAGTTTCATACATATTACTCACAGACCAAAAAGGGTGGTGGGGTAATCGATCTAGGCC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: IE_004 ATGGACCCAAACACACCTGCAGACTTCTTCAAAGGTTCTTCCAAGTTTCATACATATTACTCACAGACCAAAAAGGGTGGTGGGGTAATCGATCTAGGCC 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT2G01 TCAGCCTTAGGACCATACAACATGAAACTTACCTCCCACCGGCGCGAATGATAGGTCTCGACGGGTATGGAGAGCTCATAGACTGGTCGCAGCCCAGCTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: IE_004 TCAGCCTTAGGACCATACAACATGAAACTTACCTCCCACCGGCGCGAATGATAGGTCTCGACGGGTATGGAGAGCTCATAGACTGGTCGCAGCCCAGCTA 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT2G01 TAACAGCATTACACAGTTGAAGAGTGAGGACACTGGACACCAAAGACTTGCCCAAGGATATTACAATAATGAAGGAGAGAGCAGAGGAAAATATGCTTAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: IE_004 TAACAGCATTACACAGTTGAAGAGTGAGGACACTGGACACCAAAGACTTGCCCAAGGATATTACAATAATGAAGGAGAGAGCAGAGGAAAATATGCTTAC 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 AT2G01 GTAAAGGTAAATCTGGATGGCCTAGTGGTAGGGCGCAAGGTTTGCCTTGTTGATCAAGGAGCTTACGCAACTCTTGCTCTTCAGCTCAATGATATGTTT- ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: IE_004 GTAAAGGTAAATCTGGATGGCCTAGTGGTAGGGCGCAAGGTTTGCCTTGTTGATCAAGGAGCTTACGCAACTCTTGCTCTTCAGCTCAATGATATGTTTG 310 320 330 340 350 360 370 380 390 400 400 410 420 AT2G01 -------GACCGTGTCGGGATTGAGGTTGTTCCAGAC--------------------------------------------------------------- :::::::::::::::::::::::::::::: IE_004 GGATGCAGACCGTGTCGGGATTGAGGTTGTTCCAGACTGAGTCTGAGTTCTCTTTGGTCTACAGAGACAGAGAAGGCATTTGGAGGAATGTTGGGGATGT 410 420 430 440 450 460 470 480 490 500 AT2G01 ------------------------------------------------------------------------- IE_004 TCCATGGAAGGAGTTTGTCGAAAGCGTGGATCGGATGCGAATCGCAAGAAGAAACGATGCTCTTCTTCCCTTT 510 520 530 540 550 560 570 10 20 30 40 50 60 70 80 90 100 AT2G01 MDPNTPADFFKGSSKFHTYYSQTKKGGGVIDLGLSLRTIQHETYLPPARMIGLDGYGELIDWSQPSYNSITQLKSEDTGHQRLAQGYYNNEGESRGKYAY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: IE_004 MDPNTPADFFKGSSKFHTYYSQTKKGGGVIDLGLSLRTIQHETYLPPARMIGLDGYGELIDWSQPSYNSITQLKSEDTGHQRLAQGYYNNEGESRGKYAY 10 20 30 40 50 60 70 80 90 100 110 120 130 140 AT2G01 VKVNLDGLVVGRKVCLVDQGAYATLALQLNDMFDRVGIEVVPD--------------------------------------------------- ::::::::::::::::::::::::::::::::: :.. : IE_004 VKVNLDGLVVGRKVCLVDQGAYATLALQLNDMF---GMQTVSGLRLFQTESEFSLVYRDREGIWRNVGDVPWKEFVESVDRMRIARRNDALLPF 110 120 130 140 150 160 170 180 190 |