Code name | IE_04A10 | |||
---|---|---|---|---|
Locus | AT1G03790 | |||
Template | IT_04A10 (HR0995) | |||
Donor Vector | pDONR207 | |||
Forward primer | IPF_04A10 (ggggacaagtttgtacaaaaaagcaggcttcATGGATGTCGTTTGTACGGAACATCAAA) | |||
Reverse primer | IPR_04A10 (ggggaccactttgtacaagaaagctgggttAGTCAAGAGATCATTGACCCATCCTAGATC) | |||
Alignment with template seq. | 1st | アミノ酸配列100%一致 | 2nd | アミノ酸配列100%一致 |
Alignment with TAIR7CDS | アミノ酸配列99.70%一致 | アミノ酸配列99.70%一致 | ||
comment | 1st:(Sequence解析まで行ったが、読み直す必要がある), 2nd:Templateの配列とは一致 | |||
sequence |
>IE_04A10_1179bp ATGGATGTCGTTTGTACGGAACATCAAATGAGGAAGCCAACGGTGGAGATTCCTCCGAGAAAGCTTCTTTTATCTTCCAAGAGTTTTCCTTCTGATTCTT CTTCCCCTCGCTCGCCGCGTAAACATAACTGGAACAAAAGCAACAAGATTACATCTGAACATGAAGAAGACAACGAAGACAACAACAGAGAGAATAAAGA GTACTGTTATGATTCTGACTCTGATGATCCTTACGCAAGTGATCATTTCCGGATGTTCGAATTCAAGATCCGTCGTTGCACTCGTAGCCGAAGCCACGAT TGGACTGATTGTCCTTTTGCTCATCCCGGTGAGAAAGCTCGCCGTCGTGACCCTCGTCGCTTTCAATACTCCGGTGAGGTTTGTCCCGAGTTTCGTCGTG GTGGTGATTGTAGCCGTGGAGATGATTGTGAGTTTGCTCATGGAGTCTTCGAGTGTTGGCTCCATCCTATTCGTTACCGTACTGAAGCTTGTAAAGACGG TAAACACTGTAAAAGGAAAGTCTGTTTCTTTGCTCATTCGCCACGTCAGCTTAGGGTTCTTCCTCCGGAGAACGTTTCCGGTGTCTCAGCGTCGCCTTCT CCTGCGGCGAAGAATCCATGTTGCTTGTTTTGTAGCAGCTCTCCCACGAGCACTCTTTTGGGTAATTTGTCTCATCTTTCTCGATCTCCGTCTCTGTCTC CACCTATGTCTCCGGCTAATAAAGCCGCTGCTTTTTCACGGTTGAGGAACCGCGCCGCTTCTGCCGTTTCCGCCGCTGCAGCCGCTGGTTCAATGAACTA TAAAGACGTTTTGAGCGAGCTTGTGAATTCTTTGGATTCCATGAGCTTAGCGGAAGCGCTGCAGGCGAGTTCCTCGTCGCCCGTTACAACTCCGGTTTCC GCTGCGGCTGCCGCGTTTGCGTCGTCCTGCGGTCTGAGCAATCAGCGTCTCCATCTCCAGCAACAACAACCAAGTAGCCCTTTGCAATTTGCTCTTTCGC CTTCCACTCCAAGTTACCTAACTAACTCACCTCAGGCGAACTTCTTCAGTGATGATTTCACTCCTCGCCGGAGACAGATAAACGATTTCACGGCGATGAC GGCCGTTAGGGAGAATACTAACATTGAGGATGGTTCTTGTGGTGACCCTGATCTAGGATGGGTCAATGATCTCTTGACT >IE_04A10_translated MDVVCTEHQMRKPTVEIPPRKLLLSSKSFPSDSSSPRSPRKHNWNKSNKITSEHEEDNEDNNRENKEYCYDSDSDDPYASDHFRMFEFKIRRCTRSRSHD WTDCPFAHPGEKARRRDPRRFQYSGEVCPEFRRGGDCSRGDDCEFAHGVFECWLHPIRYRTEACKDGKHCKRKVCFFAHSPRQLRVLPPENVSGVSASPS PAAKNPCCLFCSSSPTSTLLGNLSHLSRSPSLSPPMSPANKAAAFSRLRNRAASAVSAAAAAGSMNYKDVLSELVNSLDSMSLAEALQASSSSPVTTPVS AAAAAFASSCGLSNQRLHLQQQQPSSPLQFALSPSTPSYLTNSPQANFFSDDFTPRRRQINDFTAMTAVRENTNIEDGSCGDPDLGWVNDLLT |
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Alignment |
◆CDS(TAIRver.9)_without_stop_codonとのalignment◆ 1178/1179 (99.9%)(アミノ酸配列で392/393 (99.7%))一致しました。 10 20 30 40 50 60 70 80 90 100 AT1G03 ATGGATGTCGTTTGTACGGAACATCAAATGAGGAAGCCAACGGTGGAGATTCCTCCGAGAAAGCTTCTTTTATCTTCCAAGAGTTTTCCTTCTGATTCTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: IE_04A ATGGATGTCGTTTGTACGGAACATCAAATGAGGAAGCCAACGGTGGAGATTCCTCCGAGAAAGCTTCTTTTATCTTCCAAGAGTTTTCCTTCTGATTCTT 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT1G03 CTTCCCCTCGCTCGCCGCGTAAACATAACTGGAACAAAAGCAACAAGATTACATCTGAACATGAAGAAGACAACGAAGACAACAACAGAGAGAATAAAGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: IE_04A CTTCCCCTCGCTCGCCGCGTAAACATAACTGGAACAAAAGCAACAAGATTACATCTGAACATGAAGAAGACAACGAAGACAACAACAGAGAGAATAAAGA 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT1G03 GTACTGTTATGATTCTGACTCTGATGATCCTTACGCAAGTGATCATTTCCGGATGTTCGAATTCAAGATCCGTCGTTGCACTCGTAGCCGAAGCCACGAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: IE_04A GTACTGTTATGATTCTGACTCTGATGATCCTTACGCAAGTGATCATTTCCGGATGTTCGAATTCAAGATCCGTCGTTGCACTCGTAGCCGAAGCCACGAT 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT1G03 TGGACTGATTGTCCTTTTGCTCATCCCGGTGAGAAAGCTCGCCGTCGTGACCCTCGTCGCTTTCAATACTCCGGTGAGGTTTGTCCCGAGTTTCGTCGTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: IE_04A TGGACTGATTGTCCTTTTGCTCATCCCGGTGAGAAAGCTCGCCGTCGTGACCCTCGTCGCTTTCAATACTCCGGTGAGGTTTGTCCCGAGTTTCGTCGTG 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT1G03 GTGGTGATTGTAGCCGTGGAGATGATTGTGAGTTTGCTCATGGAGTCTTCGAGTGTTGGCTCCATCCTATTCGTTACCGTACTGAAGCTTGTAAAGACGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: IE_04A GTGGTGATTGTAGCCGTGGAGATGATTGTGAGTTTGCTCATGGAGTCTTCGAGTGTTGGCTCCATCCTATTCGTTACCGTACTGAAGCTTGTAAAGACGG 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT1G03 TAAACACTGTAAAAGGAAAGTCTGTTTCTTTGCTCATTCGCCACGTCAGCTTAGGGTTCTTCCTCCGGAGAACGTTTCCGGTGTCTCAGCGTCGCCTTCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: IE_04A TAAACACTGTAAAAGGAAAGTCTGTTTCTTTGCTCATTCGCCACGTCAGCTTAGGGTTCTTCCTCCGGAGAACGTTTCCGGTGTCTCAGCGTCGCCTTCT 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT1G03 CCTGCGGCGAAGAATCCATGTTGCTTGTTTTGTAGCAGCTCTCCCACGAGCACTCTTTTGGGTAATTTGTCTCATCTTTCTCGATCTCCGTCTCTGTCTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: IE_04A CCTGCGGCGAAGAATCCATGTTGCTTGTTTTGTAGCAGCTCTCCCACGAGCACTCTTTTGGGTAATTTGTCTCATCTTTCTCGATCTCCGTCTCTGTCTC 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT1G03 CACCTATGTCTCCGGCTAATAAAGCCGCTGCTTTTTCACGGTTGAGGAACCGCGCCGCTTCTGCCGTTTCCGCCGCTGCAGCCGCTGGTTCAATGAACTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: IE_04A CACCTATGTCTCCGGCTAATAAAGCCGCTGCTTTTTCACGGTTGAGGAACCGCGCCGCTTCTGCCGTTTCCGCCGCTGCAGCCGCTGGTTCAATGAACTA 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT1G03 TAAAGACGTTTTGAGCGAGCTTGTGAATTCTTTGGATTCCATGAGCTTAGCGGAAGCGCTGCAGGCGAGTTCCTCGTCGCCCGTTACAACTCCGGTTTCC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: IE_04A TAAAGACGTTTTGAGCGAGCTTGTGAATTCTTTGGATTCCATGAGCTTAGCGGAAGCGCTGCAGGCGAGTTCCTCGTCGCCCGTTACAACTCCGGTTTCC 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT1G03 GCTGCGGCTGCCGCGTTTGCGTCGTCCTGCGGTCTGAGCAATCAGCGTCTCCATCTCCAGCAACAACAACCAAGTAGCCCTTTGCAATTTGCTCTTTCGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: IE_04A GCTGCGGCTGCCGCGTTTGCGTCGTCCTGCGGTCTGAGCAATCAGCGTCTCCATCTCCAGCAACAACAACCAAGTAGCCCTTTGCAATTTGCTCTTTCGC 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT1G03 CTTCCACTCCAAGTTACCTAACTAACTCACCTCAGGCGAACTTCTTCAGTGATGATTTCACTCCTCGCCGGAGACAGATGAACGATTTCACGGCGATGAC ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::: IE_04A CTTCCACTCCAAGTTACCTAACTAACTCACCTCAGGCGAACTTCTTCAGTGATGATTTCACTCCTCGCCGGAGACAGATAAACGATTTCACGGCGATGAC 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 AT1G03 GGCCGTTAGGGAGAATACTAACATTGAGGATGGTTCTTGTGGTGACCCTGATCTAGGATGGGTCAATGATCTCTTGACT ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: IE_04A GGCCGTTAGGGAGAATACTAACATTGAGGATGGTTCTTGTGGTGACCCTGATCTAGGATGGGTCAATGATCTCTTGACT 1110 1120 1130 1140 1150 1160 1170 10 20 30 40 50 60 70 80 90 100 AT1G03 MDVVCTEHQMRKPTVEIPPRKLLLSSKSFPSDSSSPRSPRKHNWNKSNKITSEHEEDNEDNNRENKEYCYDSDSDDPYASDHFRMFEFKIRRCTRSRSHD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: IE_04A MDVVCTEHQMRKPTVEIPPRKLLLSSKSFPSDSSSPRSPRKHNWNKSNKITSEHEEDNEDNNRENKEYCYDSDSDDPYASDHFRMFEFKIRRCTRSRSHD 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT1G03 WTDCPFAHPGEKARRRDPRRFQYSGEVCPEFRRGGDCSRGDDCEFAHGVFECWLHPIRYRTEACKDGKHCKRKVCFFAHSPRQLRVLPPENVSGVSASPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: IE_04A WTDCPFAHPGEKARRRDPRRFQYSGEVCPEFRRGGDCSRGDDCEFAHGVFECWLHPIRYRTEACKDGKHCKRKVCFFAHSPRQLRVLPPENVSGVSASPS 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT1G03 PAAKNPCCLFCSSSPTSTLLGNLSHLSRSPSLSPPMSPANKAAAFSRLRNRAASAVSAAAAAGSMNYKDVLSELVNSLDSMSLAEALQASSSSPVTTPVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: IE_04A PAAKNPCCLFCSSSPTSTLLGNLSHLSRSPSLSPPMSPANKAAAFSRLRNRAASAVSAAAAAGSMNYKDVLSELVNSLDSMSLAEALQASSSSPVTTPVS 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 AT1G03 AAAAAFASSCGLSNQRLHLQQQQPSSPLQFALSPSTPSYLTNSPQANFFSDDFTPRRRQMNDFTAMTAVRENTNIEDGSCGDPDLGWVNDLLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::: IE_04A AAAAAFASSCGLSNQRLHLQQQQPSSPLQFALSPSTPSYLTNSPQANFFSDDFTPRRRQINDFTAMTAVRENTNIEDGSCGDPDLGWVNDLLT 310 320 330 340 350 360 370 380 390 |