| Code name | RE_0019 | |||
|---|---|---|---|---|
| Locus | AT1G12610 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.50%一致 | |||
| comment | 0115_アミノ酸配列70%以上一致 | |||
| sequence |
>RE_0019_627bp ATGAATAATGATGATATTATTCTGGCGGAGATGAGGCCTAAGAAGCGTGCGGGAAGGAGAGTGTTTAAGGAGACACGTCACCCAGTTTACAGAGGCATAA GGCGGAGGAACGGTGACAAATGGGTCTGCGAAGTCAGAGAACCGACGCACCAACGCCGCATTTGGCTCGGGACTTATCCCACAGCAGATATGGCAGCGCG TGCACACGACGTGGCGGTTTTAGCTCTGCGTGGGAGATCCGCATGTTTGAATTTCGCCGACTCCGCTTGGCGGCTTCCGGTGCCGGAATCCAATGATCCG GATGTGATAAGAAGAGTTGCGGCGGAAGCTGCGGAGATGTTTAGGCCGGTGGATTTAGAAAGTGGAATTACGGTTTTGCCTTGTGCGGGAGATGATGTGG ATTTGGGTTTTGGTTCGGGTTCCGGCTCAGGTTCGGGATCGGAGGAGAGGAATTTTTCTTCGTATGGATTTGGAGACTACGAAGAAGTCTCAACGACGAT GATGAGACTCGCGGAGGGGCCACTAATGTCGCCGCCGCGATCGTATATGGAAGACATGACTCCTACTAATGTTTACACGGAAGAAGAGATGTGTTATGAA GATATGTCATTGTGGAGTTACAGATAT >RE_0019_translated MNNDDIILAEMRPKKRAGRRVFKETRHPVYRGIRRRNGDKWVCEVREPTHQRRIWLGTYPTADMAARAHDVAVLALRGRSACLNFADSAWRLPVPESNDP DVIRRVAAEAAEMFRPVDLESGITVLPCAGDDVDLGFGSGSGSGSGSEERNFSSYGFGDYEEVSTTMMRLAEGPLMSPPRSYMEDMTPTNVYTEEEMCYE DMSLWSYRY |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 625/627 (99.7%)（アミノ酸配列で208/209 (99.5%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT1G12 ATGAATAATGATGATATTATTCTGGCGGAGATGAGGCCTAAGAAGCGTGCGGGAAGGAGAGTGTTTAAGGAGACACGTCACCCAGTTTACAGAGGCATAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_001 ATGAATAATGATGATATTATTCTGGCGGAGATGAGGCCTAAGAAGCGTGCGGGAAGGAGAGTGTTTAAGGAGACACGTCACCCAGTTTACAGAGGCATAA
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT1G12 GGCGGAGGAACGGTGACAAATGGGTCTGCGAAGTCAGAGAACCGACGCACCAACGCCGCATTTGGCTCGGGACTTATCCCACAGCAGATATGGCAGCGCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_001 GGCGGAGGAACGGTGACAAATGGGTCTGCGAAGTCAGAGAACCGACGCACCAACGCCGCATTTGGCTCGGGACTTATCCCACAGCAGATATGGCAGCGCG
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT1G12 TGCACACGACGTGGCGGTTTTAGCTCTGCGTGGGAGATCCGCATGTTTGAATTTCGCCGACTCCGCTTGGCGGCTTCCGGTGCCGGAATCCAATGATCCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_001 TGCACACGACGTGGCGGTTTTAGCTCTGCGTGGGAGATCCGCATGTTTGAATTTCGCCGACTCCGCTTGGCGGCTTCCGGTGCCGGAATCCAATGATCCG
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT1G12 GATGTGATAAGAAGAGTTGCGGCGGAAGCTGCGGAGATGTTTAGGCCGGTGGATTTAGAAAGTGGAATTACGGTTTTGCCTTGTGCGGGAGATGATGTGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_001 GATGTGATAAGAAGAGTTGCGGCGGAAGCTGCGGAGATGTTTAGGCCGGTGGATTTAGAAAGTGGAATTACGGTTTTGCCTTGTGCGGGAGATGATGTGG
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT1G12 ATTTGGGTTTTGGTTCGGGTTCCGGCTCTGGTTCGGGATCGGAGGAGAGGAATTCTTCTTCGTATGGATTTGGAGACTACGAAGAAGTCTCAACGACGAT
:::::::::::::::::::::::::::: ::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::
RE_001 ATTTGGGTTTTGGTTCGGGTTCCGGCTCAGGTTCGGGATCGGAGGAGAGGAATTTTTCTTCGTATGGATTTGGAGACTACGAAGAAGTCTCAACGACGAT
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT1G12 GATGAGACTCGCGGAGGGGCCACTAATGTCGCCGCCGCGATCGTATATGGAAGACATGACTCCTACTAATGTTTACACGGAAGAAGAGATGTGTTATGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_001 GATGAGACTCGCGGAGGGGCCACTAATGTCGCCGCCGCGATCGTATATGGAAGACATGACTCCTACTAATGTTTACACGGAAGAAGAGATGTGTTATGAA
510 520 530 540 550 560 570 580 590 600
610 620
AT1G12 GATATGTCATTGTGGAGTTACAGATAT
:::::::::::::::::::::::::::
RE_001 GATATGTCATTGTGGAGTTACAGATAT
610 620
10 20 30 40 50 60 70 80 90 100
AT1G12 MNNDDIILAEMRPKKRAGRRVFKETRHPVYRGIRRRNGDKWVCEVREPTHQRRIWLGTYPTADMAARAHDVAVLALRGRSACLNFADSAWRLPVPESNDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_001 MNNDDIILAEMRPKKRAGRRVFKETRHPVYRGIRRRNGDKWVCEVREPTHQRRIWLGTYPTADMAARAHDVAVLALRGRSACLNFADSAWRLPVPESNDP
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT1G12 DVIRRVAAEAAEMFRPVDLESGITVLPCAGDDVDLGFGSGSGSGSGSEERNSSSYGFGDYEEVSTTMMRLAEGPLMSPPRSYMEDMTPTNVYTEEEMCYE
::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
RE_001 DVIRRVAAEAAEMFRPVDLESGITVLPCAGDDVDLGFGSGSGSGSGSEERNFSSYGFGDYEEVSTTMMRLAEGPLMSPPRSYMEDMTPTNVYTEEEMCYE
110 120 130 140 150 160 170 180 190 200
AT1G12 DMSLWSYRY
:::::::::
RE_001 DMSLWSYRY
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