| Code name | RE_0020 | |||
|---|---|---|---|---|
| Locus | AT1G12630 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列97.40%一致 | |||
| comment | 0115_アミノ酸配列70%以上一致 | |||
| sequence |
>RE_0020_564bp ATGGCTTCTGCCGGCTTAGGTAGCCGGAGAAAGGATCCGGTGTACAGAGGAATCCGGTGCCGAAGTGGGAAATGGGTCTCCGAGATTCGTGAGCCGAGGA AAACCACGAGAATCTGGCTTGGAACTTACCCCATGGCAGAGATGGCAGCAGCCGCCTATGATGTGGCTGCTATGGCTCTTAAAGGAAGAGAAGCTGTCTT GAACTTCCCTGGATCCGTCGGGTCATACCCGGTTCCTGAATCAACATCCGCAGCAGATATACGAGCCGCTGCGGCAGCCGCAGCAGCAATGAAGGGATGT GAGGAAGGGGAGGAGGAGAGAAAGGCAAAGGAGAAGAAGAGTAGTAGTTCGAAGTCGAGAGCGCGTGAGTGCCACGTAGATAATGATGTTGGATCTTCGT CGTGGTGTGGGACAGAGTTCATGGACGAAGAAGAAGTCTTGAATATGCCTAATCTGCTGGCTAATATGGCAGAAGGGATGATGGTTGCGCCGCCGTCGTG GATGGGTTCTCGGCCGTCGGATGACTCTCCGGAGAATTCAAATGATGAGGACTTGTGGGGCTAT >RE_0020_translated MASAGLGSRRKDPVYRGIRCRSGKWVSEIREPRKTTRIWLGTYPMAEMAAAAYDVAAMALKGREAVLNFPGSVGSYPVPESTSAADIRAAAAAAAAMKGC EEGEEERKAKEKKSSSSKSRARECHVDNDVGSSSWCGTEFMDEEEVLNMPNLLANMAEGMMVAPPSWMGSRPSDDSPENSNDEDLWGY |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 563/576 (97.7%)（アミノ酸配列で187/192 (97.4%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT1G12 ATGAATAGTTCAATGGCTTCTGCCGGCTTAGGTAGCCGGAGAAAGGATCCGGTGTACAGAGGAATCCGGTGCCGAAGTGGGAAATGGGTCTCCGAGATTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_002 ------------ATGGCTTCTGCCGGCTTAGGTAGCCGGAGAAAGGATCCGGTGTACAGAGGAATCCGGTGCCGAAGTGGGAAATGGGTCTCCGAGATTC
10 20 30 40 50 60 70 80
110 120 130 140 150 160 170 180 190 200
AT1G12 GTGAGCCGAGGAAAACCACGAGAATCTGGCTTGGAACTTACCCCATGGCAGAGATGGCAGCAGCCGCCTATGATGTGGCTGCTATGGCTCTTAAAGGAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_002 GTGAGCCGAGGAAAACCACGAGAATCTGGCTTGGAACTTACCCCATGGCAGAGATGGCAGCAGCCGCCTATGATGTGGCTGCTATGGCTCTTAAAGGAAG
90 100 110 120 130 140 150 160 170 180
210 220 230 240 250 260 270 280 290 300
AT1G12 AGAAGCTGTCTTGAACTTCCCTGGATCCGTCGGGTCATACCCGGTTCCTGAATCAACATCCGCAGCAGATATACGAGCCGCTGCGGCAGCCGCAGCAGCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_002 AGAAGCTGTCTTGAACTTCCCTGGATCCGTCGGGTCATACCCGGTTCCTGAATCAACATCCGCAGCAGATATACGAGCCGCTGCGGCAGCCGCAGCAGCA
190 200 210 220 230 240 250 260 270 280
310 320 330 340 350 360 370 380 390 400
AT1G12 ATGAAGGGATGTGAGGAAGGGGAGGAGGAGAAAAAGGCAAAGGAGAAGAAGAGTAGTAGTTCGAAGTCGAGAGCGCGTGAGTGCCACGTAGATAATGATG
::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_002 ATGAAGGGATGTGAGGAAGGGGAGGAGGAGAGAAAGGCAAAGGAGAAGAAGAGTAGTAGTTCGAAGTCGAGAGCGCGTGAGTGCCACGTAGATAATGATG
290 300 310 320 330 340 350 360 370 380
410 420 430 440 450 460 470 480 490 500
AT1G12 TTGGATCTTCGTCGTGGTGTGGGACAGAGTTCATGGACGAAGAAGAAGTCTTGAATATGCCTAATCTGCTGGCTAATATGGCAGAAGGGATGATGGTTGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_002 TTGGATCTTCGTCGTGGTGTGGGACAGAGTTCATGGACGAAGAAGAAGTCTTGAATATGCCTAATCTGCTGGCTAATATGGCAGAAGGGATGATGGTTGC
390 400 410 420 430 440 450 460 470 480
510 520 530 540 550 560 570
AT1G12 GCCGCCGTCGTGGATGGGTTCTCGGCCGTCGGATGACTCTCCGGAGAATTCAAATGATGAGGACTTGTGGGGCTAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_002 GCCGCCGTCGTGGATGGGTTCTCGGCCGTCGGATGACTCTCCGGAGAATTCAAATGATGAGGACTTGTGGGGCTAT
490 500 510 520 530 540 550 560
10 20 30 40 50 60 70 80 90 100
AT1G12 MNSSMASAGLGSRRKDPVYRGIRCRSGKWVSEIREPRKTTRIWLGTYPMAEMAAAAYDVAAMALKGREAVLNFPGSVGSYPVPESTSAADIRAAAAAAAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_002 ----MASAGLGSRRKDPVYRGIRCRSGKWVSEIREPRKTTRIWLGTYPMAEMAAAAYDVAAMALKGREAVLNFPGSVGSYPVPESTSAADIRAAAAAAAA
10 20 30 40 50 60 70 80 90
110 120 130 140 150 160 170 180 190
AT1G12 MKGCEEGEEEKKAKEKKSSSSKSRARECHVDNDVGSSSWCGTEFMDEEEVLNMPNLLANMAEGMMVAPPSWMGSRPSDDSPENSNDEDLWGY
::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_002 MKGCEEGEEERKAKEKKSSSSKSRARECHVDNDVGSSSWCGTEFMDEEEVLNMPNLLANMAEGMMVAPPSWMGSRPSDDSPENSNDEDLWGY
100 110 120 130 140 150 160 170 180
|
|||