| Code name | RE_0025 | |||
|---|---|---|---|---|
| Locus | AT1G16060 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列100%一致 | |||
| comment | 0229_アミノ酸配列100%一致 | |||
| sequence |
>RE_0025_1035bp ATGTTCATCGCCGTCGAAGTTTCTCCGGTAATGGAAGACATCACACGGCAAAGCAAAAAAACTTCGGTTGAGAATGAAACCGGCGATGATCAGTCAGCAA CATCAGTAGTCCTTAAAGCTAAACGCAAACGCCGATCGCAACCACGAGACGCTCCACCCCAACGTAGCTCCGTCCATAGAGGCGTCACAAGGCATCGATG GACTGGAAGGTACGAAGCACATTTGTGGGATAAGAATAGTTGGAACGAAACTCAGACCAAGAAAGGAAGACAAGTATATTTAGGGGCATATGACGAGGAA GATGCAGCAGCACGTGCCTACGACTTAGCAGCATTGAAATATTGGGGACGAGACACCATCTTGAACTTCCCTTTGTGTAATTATGAAGAAGACATCAAAG AAATGGAAAGCCAGTCAAAGGAAGAGTATATTGGATCTTTGAGAAGAAAAAGTAGTGGGTTTTCACGAGGTGTATCAAAATACAGAGGCGTTGCAAAGCA TCACCACAATGGGAGATGGGAAGCTCGAATCGGAAGAGTGTTTGGCAATAAATATTTATACCTTGGAACTTACGCGACGCAAGAAGAAGCAGCTATAGCG TACGATATCGCAGCTATCGAGTACCGTGGACTCAACGCCGTTACTAACTTCGACATCAGCCGTTATCTGAAACTCCCGGTGCCGGAGAACCCTATCGATA CCGCGAATAATCTCCTCGAGAGTCCGCATTCTGATCTTAGCCCATTTATAAAACCTAACCACGAGTCTGACTTATCACAGAGTCAATCTTCGTCAGAGGA CAACGATGATCGGAAAACAAAGCTCTTGAAGTCGTCACCTTTAGTGGCAGAGGAGGTAATCGGACCATCGACGCCACCTGAGATTGCTCCGCCTCGTCGG AGCTTCCCGGAAGATATCCAGACGTATTTCGGGTGTCAAAACTCCGGCAAGTTAACGGCGGAGGAAGATGATGTTATCTTCGGTGATTTAGATTCTTTCC TTACGCCTGATTTCTACAGCGAGTTAAATGATTGC >RE_0025_translated MFIAVEVSPVMEDITRQSKKTSVENETGDDQSATSVVLKAKRKRRSQPRDAPPQRSSVHRGVTRHRWTGRYEAHLWDKNSWNETQTKKGRQVYLGAYDEE DAAARAYDLAALKYWGRDTILNFPLCNYEEDIKEMESQSKEEYIGSLRRKSSGFSRGVSKYRGVAKHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAIA YDIAAIEYRGLNAVTNFDISRYLKLPVPENPIDTANNLLESPHSDLSPFIKPNHESDLSQSQSSSEDNDDRKTKLLKSSPLVAEEVIGPSTPPEIAPPRR SFPEDIQTYFGCQNSGKLTAEEDDVIFGDLDSFLTPDFYSELNDC |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1034/1035 (99.9%)（アミノ酸配列で100%）一致しました。
10 20 30 40 50 60 70 80 90 100
AT1G16 ATGTTCATCGCCGTCGAAGTTTCTCCGGTAATGGAAGACATCACACGGCAGAGCAAAAAAACTTCGGTTGAGAATGAAACCGGCGATGATCAGTCAGCAA
:::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::
RE_002 ATGTTCATCGCCGTCGAAGTTTCTCCGGTAATGGAAGACATCACACGGCAAAGCAAAAAAACTTCGGTTGAGAATGAAACCGGCGATGATCAGTCAGCAA
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT1G16 CATCAGTAGTCCTTAAAGCTAAACGCAAACGCCGATCGCAACCACGAGACGCTCCACCCCAACGTAGCTCCGTCCATAGAGGCGTCACAAGGCATCGATG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_002 CATCAGTAGTCCTTAAAGCTAAACGCAAACGCCGATCGCAACCACGAGACGCTCCACCCCAACGTAGCTCCGTCCATAGAGGCGTCACAAGGCATCGATG
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT1G16 GACTGGAAGGTACGAAGCACATTTGTGGGATAAGAATAGTTGGAACGAAACTCAGACCAAGAAAGGAAGACAAGTATATTTAGGGGCATATGACGAGGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_002 GACTGGAAGGTACGAAGCACATTTGTGGGATAAGAATAGTTGGAACGAAACTCAGACCAAGAAAGGAAGACAAGTATATTTAGGGGCATATGACGAGGAA
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT1G16 GATGCAGCAGCACGTGCCTACGACTTAGCAGCATTGAAATATTGGGGACGAGACACCATCTTGAACTTCCCTTTGTGTAATTATGAAGAAGACATCAAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_002 GATGCAGCAGCACGTGCCTACGACTTAGCAGCATTGAAATATTGGGGACGAGACACCATCTTGAACTTCCCTTTGTGTAATTATGAAGAAGACATCAAAG
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT1G16 AAATGGAAAGCCAGTCAAAGGAAGAGTATATTGGATCTTTGAGAAGAAAAAGTAGTGGGTTTTCACGAGGTGTATCAAAATACAGAGGCGTTGCAAAGCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_002 AAATGGAAAGCCAGTCAAAGGAAGAGTATATTGGATCTTTGAGAAGAAAAAGTAGTGGGTTTTCACGAGGTGTATCAAAATACAGAGGCGTTGCAAAGCA
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT1G16 TCACCACAATGGGAGATGGGAAGCTCGAATCGGAAGAGTGTTTGGCAATAAATATTTATACCTTGGAACTTACGCGACGCAAGAAGAAGCAGCTATAGCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_002 TCACCACAATGGGAGATGGGAAGCTCGAATCGGAAGAGTGTTTGGCAATAAATATTTATACCTTGGAACTTACGCGACGCAAGAAGAAGCAGCTATAGCG
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660 670 680 690 700
AT1G16 TACGATATCGCAGCTATCGAGTACCGTGGACTCAACGCCGTTACTAACTTCGACATCAGCCGTTATCTGAAACTCCCGGTGCCGGAGAACCCTATCGATA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_002 TACGATATCGCAGCTATCGAGTACCGTGGACTCAACGCCGTTACTAACTTCGACATCAGCCGTTATCTGAAACTCCCGGTGCCGGAGAACCCTATCGATA
610 620 630 640 650 660 670 680 690 700
710 720 730 740 750 760 770 780 790 800
AT1G16 CCGCGAATAATCTCCTCGAGAGTCCGCATTCTGATCTTAGCCCATTTATAAAACCTAACCACGAGTCTGACTTATCACAGAGTCAATCTTCGTCAGAGGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_002 CCGCGAATAATCTCCTCGAGAGTCCGCATTCTGATCTTAGCCCATTTATAAAACCTAACCACGAGTCTGACTTATCACAGAGTCAATCTTCGTCAGAGGA
710 720 730 740 750 760 770 780 790 800
810 820 830 840 850 860 870 880 890 900
AT1G16 CAACGATGATCGGAAAACAAAGCTCTTGAAGTCGTCACCTTTAGTGGCAGAGGAGGTAATCGGACCATCGACGCCACCTGAGATTGCTCCGCCTCGTCGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_002 CAACGATGATCGGAAAACAAAGCTCTTGAAGTCGTCACCTTTAGTGGCAGAGGAGGTAATCGGACCATCGACGCCACCTGAGATTGCTCCGCCTCGTCGG
810 820 830 840 850 860 870 880 890 900
910 920 930 940 950 960 970 980 990 1000
AT1G16 AGCTTCCCGGAAGATATCCAGACGTATTTCGGGTGTCAAAACTCCGGCAAGTTAACGGCGGAGGAAGATGATGTTATCTTCGGTGATTTAGATTCTTTCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_002 AGCTTCCCGGAAGATATCCAGACGTATTTCGGGTGTCAAAACTCCGGCAAGTTAACGGCGGAGGAAGATGATGTTATCTTCGGTGATTTAGATTCTTTCC
910 920 930 940 950 960 970 980 990 1000
1010 1020 1030
AT1G16 TTACGCCTGATTTCTACAGCGAGTTAAATGATTGC
:::::::::::::::::::::::::::::::::::
RE_002 TTACGCCTGATTTCTACAGCGAGTTAAATGATTGC
1010 1020 1030
10 20 30 40 50 60 70 80 90 100
AT1G16 MFIAVEVSPVMEDITRQSKKTSVENETGDDQSATSVVLKAKRKRRSQPRDAPPQRSSVHRGVTRHRWTGRYEAHLWDKNSWNETQTKKGRQVYLGAYDEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_002 MFIAVEVSPVMEDITRQSKKTSVENETGDDQSATSVVLKAKRKRRSQPRDAPPQRSSVHRGVTRHRWTGRYEAHLWDKNSWNETQTKKGRQVYLGAYDEE
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT1G16 DAAARAYDLAALKYWGRDTILNFPLCNYEEDIKEMESQSKEEYIGSLRRKSSGFSRGVSKYRGVAKHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_002 DAAARAYDLAALKYWGRDTILNFPLCNYEEDIKEMESQSKEEYIGSLRRKSSGFSRGVSKYRGVAKHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAIA
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT1G16 YDIAAIEYRGLNAVTNFDISRYLKLPVPENPIDTANNLLESPHSDLSPFIKPNHESDLSQSQSSSEDNDDRKTKLLKSSPLVAEEVIGPSTPPEIAPPRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_002 YDIAAIEYRGLNAVTNFDISRYLKLPVPENPIDTANNLLESPHSDLSPFIKPNHESDLSQSQSSSEDNDDRKTKLLKSSPLVAEEVIGPSTPPEIAPPRR
210 220 230 240 250 260 270 280 290 300
310 320 330 340
AT1G16 SFPEDIQTYFGCQNSGKLTAEEDDVIFGDLDSFLTPDFYSELNDC
:::::::::::::::::::::::::::::::::::::::::::::
RE_002 SFPEDIQTYFGCQNSGKLTAEEDDVIFGDLDSFLTPDFYSELNDC
310 320 330 340
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