◆◆◆RE_0049 detail◆◆◆

Code name	RE_0049
Locus	AT1G64380
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.70%一致
comment	0115_アミノ酸配列70%以上一致/0422_アミノ酸配列70%以上一致
sequence	>RE_0049_1005bp ATGGAAGAAAGCAATGATATTTTTCAGAACAATTTCAGTCCTAAAATCTCAGAAATCAGAGCATCTCTGTCTCAGATCATATTAGCAGGAGGACCAAACA CACTCGACTCAATCTTCTCACTTCTCACTCCCTCCTCCGTAGAATCCGCCACAACATCATTCAACACTCACAATCCTCCGCCACCGCCGCAGCTCGGGTC CTCCGTCTATCTCCGCCAACGAGATATCATCGAGAAGTTCCACCTTCAGAACAGAGCAATCTCCACTCCTCATCCTCCTCTGTTTTCCTCAACGTACGAT CATCATCAAACTTCCGAGCTAATGCTCCAAGCGGCGGCCGGGTCTCCAGCCGCCGCTTTCGCCGCTGCGTTAGCGGCTGGGAGGGTGACGAAAAAGAAGA AACTTTACAGAGGAGTGAGGCAGAGACATTGGGGAAAATGGGTTGCGGAGATAAGATTGCCGCAAAACAGAATGAGGGTTTGGTTAGGTGCTTACGACAC GGCGGAAGCCGCCGCTTACGCTTACGATCGCGCCGCCTATAAGCTCCGTGGAGAATACGCTCGTCTCAATTTTCCTAATCTCAAAGACCCGAGTGAGCTA CTCGGACTCGGAGATTCCTCTAAGCTAATAGCTCTCAAGAACGCCGTCGACGGGAAGATCCAATCCATTTGCCAGAGAGTCAGAAAAGAGAGAGCAAAAA AGAGCGTAAAAGTGAGCAAAAACTCGTCGGCCACGGCGGATTCTTCGTGTTTGTCATCGCCGGAGATTCTGTCGTCGTCTCCGGTGACGACAACTACTAC TGCGGTTACTTCAGAGGATAGTTATTGGGTTTCACCTATGGGTTTGTGTAACAGTGAAAATAGTTCTCCGGTATCAGTTTCGGTCCCTAGTGAAGTACCG GCGACGGCGGAGGAAGAGGCAATGATGGGAGTGGACACTGATGGGTTTTTATTAGCGAGGATGCCATCGTTCGATCCAGAGCTGATTTGGGAAGTTCTTG CCAAT >RE_0049_translated MEESNDIFQNNFSPKISEIRASLSQIILAGGPNTLDSIFSLLTPSSVESATTSFNTHNPPPPPQLGSSVYLRQRDIIEKFHLQNRAISTPHPPLFSSTYD HHQTSELMLQAAAGSPAAAFAAALAAGRVTKKKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGAYDTAEAAAYAYDRAAYKLRGEYARLNFPNLKDPSEL LGLGDSSKLIALKNAVDGKIQSICQRVRKERAKKSVKVSKNSSATADSSCLSSPEILSSSPVTTTTTAVTSEDSYWVSPMGLCNSENSSPVSVSVPSEVP ATAEEEAMMGVDTDGFLLARMPSFDPELIWEVLAN
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1004/1005 (99.9%)（アミノ酸配列で334/335 (99.7%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT1G64 ATGGAAGAAAGCAATGATATTTTTCAGAACAATTTCAGTCCTAAAATCTCAGAAATCAGAGCATCTCTGTCTCAGATCATATTAGCAGGAGGACCAAACA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_004 ATGGAAGAAAGCAATGATATTTTTCAGAACAATTTCAGTCCTAAAATCTCAGAAATCAGAGCATCTCTGTCTCAGATCATATTAGCAGGAGGACCAAACA 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT1G64 CACTCGACTCAATCTTCTCACTTCTCACTCCCTCCTCCGTAGAATCCGCCACAACATCATTCAACACTCACAATCCTCCGCCACCGCCGCAGCTCGGGTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_004 CACTCGACTCAATCTTCTCACTTCTCACTCCCTCCTCCGTAGAATCCGCCACAACATCATTCAACACTCACAATCCTCCGCCACCGCCGCAGCTCGGGTC 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT1G64 CTCCGTCTATCTCCGCCAACGAGATATCATCGAGAAGTTCCACCTTCAGAACAGAGCAATCTCCACTCCTCATCCTCCTCTGTTTTCCTCAACGTACGAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_004 CTCCGTCTATCTCCGCCAACGAGATATCATCGAGAAGTTCCACCTTCAGAACAGAGCAATCTCCACTCCTCATCCTCCTCTGTTTTCCTCAACGTACGAT 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT1G64 CATCATCAAACTTCCGAGCTAATGCTCCAAGCGGCGGCCGGGTCTCCAGCCGCCGCTTTCGCCGCTGCGTTAGCGGCTGGGAGGGTGACGAAAAAGAAGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_004 CATCATCAAACTTCCGAGCTAATGCTCCAAGCGGCGGCCGGGTCTCCAGCCGCCGCTTTCGCCGCTGCGTTAGCGGCTGGGAGGGTGACGAAAAAGAAGA 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT1G64 AACTTTACAGAGGAGTGAGGCAGAGACATTGGGGAAAATGGGTTGCGGAGATAAGATTGCCGCAAAACAGAATGAGGGTTTGGTTAGGTACTTACGACAC ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::: RE_004 AACTTTACAGAGGAGTGAGGCAGAGACATTGGGGAAAATGGGTTGCGGAGATAAGATTGCCGCAAAACAGAATGAGGGTTTGGTTAGGTGCTTACGACAC 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT1G64 GGCGGAAGCCGCCGCTTACGCTTACGATCGCGCCGCCTATAAGCTCCGTGGAGAATACGCTCGTCTCAATTTTCCTAATCTCAAAGACCCGAGTGAGCTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_004 GGCGGAAGCCGCCGCTTACGCTTACGATCGCGCCGCCTATAAGCTCCGTGGAGAATACGCTCGTCTCAATTTTCCTAATCTCAAAGACCCGAGTGAGCTA 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT1G64 CTCGGACTCGGAGATTCCTCTAAGCTAATAGCTCTCAAGAACGCCGTCGACGGGAAGATCCAATCCATTTGCCAGAGAGTCAGAAAAGAGAGAGCAAAAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_004 CTCGGACTCGGAGATTCCTCTAAGCTAATAGCTCTCAAGAACGCCGTCGACGGGAAGATCCAATCCATTTGCCAGAGAGTCAGAAAAGAGAGAGCAAAAA 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT1G64 AGAGCGTAAAAGTGAGCAAAAACTCGTCGGCCACGGCGGATTCTTCGTGTTTGTCATCGCCGGAGATTCTGTCGTCGTCTCCGGTGACGACAACTACTAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_004 AGAGCGTAAAAGTGAGCAAAAACTCGTCGGCCACGGCGGATTCTTCGTGTTTGTCATCGCCGGAGATTCTGTCGTCGTCTCCGGTGACGACAACTACTAC 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT1G64 TGCGGTTACTTCAGAGGATAGTTATTGGGTTTCACCTATGGGTTTGTGTAACAGTGAAAATAGTTCTCCGGTATCAGTTTCGGTCCCTAGTGAAGTACCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_004 TGCGGTTACTTCAGAGGATAGTTATTGGGTTTCACCTATGGGTTTGTGTAACAGTGAAAATAGTTCTCCGGTATCAGTTTCGGTCCCTAGTGAAGTACCG 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT1G64 GCGACGGCGGAGGAAGAGGCAATGATGGGAGTGGACACTGATGGGTTTTTATTAGCGAGGATGCCATCGTTCGATCCAGAGCTGATTTGGGAAGTTCTTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_004 GCGACGGCGGAGGAAGAGGCAATGATGGGAGTGGACACTGATGGGTTTTTATTAGCGAGGATGCCATCGTTCGATCCAGAGCTGATTTGGGAAGTTCTTG 910 920 930 940 950 960 970 980 990 1000 AT1G64 CCAAT ::::: RE_004 CCAAT 10 20 30 40 50 60 70 80 90 100 AT1G64 MEESNDIFQNNFSPKISEIRASLSQIILAGGPNTLDSIFSLLTPSSVESATTSFNTHNPPPPPQLGSSVYLRQRDIIEKFHLQNRAISTPHPPLFSSTYD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_004 MEESNDIFQNNFSPKISEIRASLSQIILAGGPNTLDSIFSLLTPSSVESATTSFNTHNPPPPPQLGSSVYLRQRDIIEKFHLQNRAISTPHPPLFSSTYD 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT1G64 HHQTSELMLQAAAGSPAAAFAAALAAGRVTKKKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYDTAEAAAYAYDRAAYKLRGEYARLNFPNLKDPSEL ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::: RE_004 HHQTSELMLQAAAGSPAAAFAAALAAGRVTKKKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGAYDTAEAAAYAYDRAAYKLRGEYARLNFPNLKDPSEL 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT1G64 LGLGDSSKLIALKNAVDGKIQSICQRVRKERAKKSVKVSKNSSATADSSCLSSPEILSSSPVTTTTTAVTSEDSYWVSPMGLCNSENSSPVSVSVPSEVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_004 LGLGDSSKLIALKNAVDGKIQSICQRVRKERAKKSVKVSKNSSATADSSCLSSPEILSSSPVTTTTTAVTSEDSYWVSPMGLCNSENSSPVSVSVPSEVP 210 220 230 240 250 260 270 280 290 300 310 320 330 AT1G64 ATAEEEAMMGVDTDGFLLARMPSFDPELIWEVLAN ::::::::::::::::::::::::::::::::::: RE_004 ATAEEEAMMGVDTDGFLLARMPSFDPELIWEVLAN 310 320 330

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