Code name | RE_0050 | |||
---|---|---|---|---|
Locus | AT1G68550 | |||
Forward primer | ||||
Reverse primer | ||||
Alignment with TAIR7CDS | アミノ酸配列99.10%一致 | |||
comment | 0115_アミノ酸配列70%以上一致 | |||
sequence |
>RE_0050_972bp ATGGTTGCGATTAGAAAGGAACAGTCTTTGAGTGGTGTTAGTAGCGAGATTAAGAAGAGAGCTAAGAGAAACACTCTATCGTCCCTTCCTCAAGAAACCC AACCTTTGAGGAAAGTCCGTATTATTGTGAGTGATCCTTATGCTACTGATGATTCCTCTAGTGATGAGGAAGAGCTTAAGGTTCCTAAGCCAAGGAAAAT GAAACGTATCGTTCGTGAGATTAACTTTCCTTCTATGGAAGTTTCTGAACAGCCTTCTGAGAGTTCTTCTCAGGACAGTACTAAAACTGATGGCAAGATA GCTGTGTCAGCTTCTCCTGCTGTTCCTAGGAAGAAGCCTGTTGGTGTTAGGCAAAGGAAATGGGGGAAATGGGCTGCTGAGATTAGAGATCCTATTAAGA AAACTAGGACTTGGTTGGGCACTTTTGATACTCTTGAAGAAGCTGCTAAAGCTTATGATGCTAAGAAGCTTGAGTTTGATGCTATTGTTGCTGGAAATGT GTCCACTACTAAACGTGATGCTTCTTCATCTGAGACTAGCCAATGCTCTCGTTCTTCACCTGTTGTTCCTGTTGAGCAAGATGACACTTCTGCATCAGCT CTCACTTGTGTCAACAACCCTGATGACGTCTCGACCGTTGCTCCAACTGCTCCAACTCCAAATGTTCCTGCTGGTGGAAACAAGGAAACGTTGTTCGATT TCGACTTTACTAATCTACAGATCCCTGATTTTGGTTTCTTGGCAGAGGAGCAACAAGACCTAGACTTCGATTGTTTCCTCGCGGATGATCAGTTTGATGA TTTCGGCTTGCTTGATGACACTCAAGGATTCGAAGATAACGGTCCAAGTGCGTTACCAGATTTCGACTTTGCGGATGTTGAAGATCTTCAGCTAGCTGAC TCTAGTTTCGGTTTCCTTGATCAACTTGCTCCTATCAACATCTCTTGCCCATTAAAAAGTTTTGCAGCTTCA >RE_0050_translated MVAIRKEQSLSGVSSEIKKRAKRNTLSSLPQETQPLRKVRIIVSDPYATDDSSSDEEELKVPKPRKMKRIVREINFPSMEVSEQPSESSSQDSTKTDGKI AVSASPAVPRKKPVGVRQRKWGKWAAEIRDPIKKTRTWLGTFDTLEEAAKAYDAKKLEFDAIVAGNVSTTKRDASSSETSQCSRSSPVVPVEQDDTSASA LTCVNNPDDVSTVAPTAPTPNVPAGGNKETLFDFDFTNLQIPDFGFLAEEQQDLDFDCFLADDQFDDFGLLDDTQGFEDNGPSALPDFDFADVEDLQLAD SSFGFLDQLAPINISCPLKSFAAS |
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Alignment |
◆CDS(TAIRver.9)_without_stop_codonとのalignment◆ 968/972 (99.6%)(アミノ酸配列で321/324 (99.1%))一致しました。 10 20 30 40 50 60 70 80 90 100 AT1G68 ATGGTTGCGATTAGAAAGGAACAGTCTTTGAGTGGTGTTAGTAGCGAGATTAAGAAGAGAGCTAAGAGAAACACTCTATCGTCCCTTCCTCAAGAAACCC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_005 ATGGTTGCGATTAGAAAGGAACAGTCTTTGAGTGGTGTTAGTAGCGAGATTAAGAAGAGAGCTAAGAGAAACACTCTATCGTCCCTTCCTCAAGAAACCC 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT1G68 AACCTTTGAGGAAAGTCCGTATTATTGTGAATGATCCTTATGCTACTGATGATTCCTCTAGTGATGAGGAAGAGCTTAAGGTTCCTAAGCCAAGGAAAAT :::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_005 AACCTTTGAGGAAAGTCCGTATTATTGTGAGTGATCCTTATGCTACTGATGATTCCTCTAGTGATGAGGAAGAGCTTAAGGTTCCTAAGCCAAGGAAAAT 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT1G68 GAAACGTATCGTTCGTGAGATTAACTTTCCTTCTATGGAAGTTTCTGAACAGCCTTCTGAGAGTTCTTCTCAGGACAGTACTAAAACTGATGGCAAGATA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_005 GAAACGTATCGTTCGTGAGATTAACTTTCCTTCTATGGAAGTTTCTGAACAGCCTTCTGAGAGTTCTTCTCAGGACAGTACTAAAACTGATGGCAAGATA 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT1G68 GCTGTGTCAGCTTCTCCTGCTGTTCCTAGGAAGAAGCCTGTTGGTGTTAGGCAAAGGAAATGGGGGAAATGGGCTGCTGAGATTAGAGATCCTATTAAGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_005 GCTGTGTCAGCTTCTCCTGCTGTTCCTAGGAAGAAGCCTGTTGGTGTTAGGCAAAGGAAATGGGGGAAATGGGCTGCTGAGATTAGAGATCCTATTAAGA 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT1G68 AAACTAGGACTTGGTTGGGTACTTTTGATACTCTTGAAGAAGCTGCTAAAGCTTATGATGCTAAGAAGCTTGAGTTTGATGCTATTGTTGCTGGAAATGT ::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_005 AAACTAGGACTTGGTTGGGCACTTTTGATACTCTTGAAGAAGCTGCTAAAGCTTATGATGCTAAGAAGCTTGAGTTTGATGCTATTGTTGCTGGAAATGT 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT1G68 GTCCACTACTAAACGTGATGTTTCTTCATCTGAGACTAGCCAATGCTCTCGTTCTTCACCTGTTGTTCCTGTTGAGCAAGATGACACTTCTGCATCAGCT :::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_005 GTCCACTACTAAACGTGATGCTTCTTCATCTGAGACTAGCCAATGCTCTCGTTCTTCACCTGTTGTTCCTGTTGAGCAAGATGACACTTCTGCATCAGCT 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT1G68 CTCACTTGTGTCAACAACCCTGATGACGTCTCGACCGTTGCTCCAACTGCTCCAACTCCAAATGTTCCTGCTGGTGGAAACAAGGAAACGTTGTTCGATT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_005 CTCACTTGTGTCAACAACCCTGATGACGTCTCGACCGTTGCTCCAACTGCTCCAACTCCAAATGTTCCTGCTGGTGGAAACAAGGAAACGTTGTTCGATT 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT1G68 TCGACTTTACTAATCTACAGATCCCTGATTTTGGTTTCTTGGCAGAGGAGCAACAAGACCTAGACTTCGATTGTTTCCTCGCGGATGATCAGTTTGATGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_005 TCGACTTTACTAATCTACAGATCCCTGATTTTGGTTTCTTGGCAGAGGAGCAACAAGACCTAGACTTCGATTGTTTCCTCGCGGATGATCAGTTTGATGA 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT1G68 TTTCGGCTTGCTTGATGACATTCAAGGATTCGAAGATAACGGTCCAAGTGCGTTACCAGATTTCGACTTTGCGGATGTTGAAGATCTTCAGCTAGCTGAC :::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_005 TTTCGGCTTGCTTGATGACACTCAAGGATTCGAAGATAACGGTCCAAGTGCGTTACCAGATTTCGACTTTGCGGATGTTGAAGATCTTCAGCTAGCTGAC 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 AT1G68 TCTAGTTTCGGTTTCCTTGATCAACTTGCTCCTATCAACATCTCTTGCCCATTAAAAAGTTTTGCAGCTTCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_005 TCTAGTTTCGGTTTCCTTGATCAACTTGCTCCTATCAACATCTCTTGCCCATTAAAAAGTTTTGCAGCTTCA 910 920 930 940 950 960 970 10 20 30 40 50 60 70 80 90 100 AT1G68 MVAIRKEQSLSGVSSEIKKRAKRNTLSSLPQETQPLRKVRIIVNDPYATDDSSSDEEELKVPKPRKMKRIVREINFPSMEVSEQPSESSSQDSTKTDGKI :::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_005 MVAIRKEQSLSGVSSEIKKRAKRNTLSSLPQETQPLRKVRIIVSDPYATDDSSSDEEELKVPKPRKMKRIVREINFPSMEVSEQPSESSSQDSTKTDGKI 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT1G68 AVSASPAVPRKKPVGVRQRKWGKWAAEIRDPIKKTRTWLGTFDTLEEAAKAYDAKKLEFDAIVAGNVSTTKRDVSSSETSQCSRSSPVVPVEQDDTSASA ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::: RE_005 AVSASPAVPRKKPVGVRQRKWGKWAAEIRDPIKKTRTWLGTFDTLEEAAKAYDAKKLEFDAIVAGNVSTTKRDASSSETSQCSRSSPVVPVEQDDTSASA 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT1G68 LTCVNNPDDVSTVAPTAPTPNVPAGGNKETLFDFDFTNLQIPDFGFLAEEQQDLDFDCFLADDQFDDFGLLDDIQGFEDNGPSALPDFDFADVEDLQLAD ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::: RE_005 LTCVNNPDDVSTVAPTAPTPNVPAGGNKETLFDFDFTNLQIPDFGFLAEEQQDLDFDCFLADDQFDDFGLLDDTQGFEDNGPSALPDFDFADVEDLQLAD 210 220 230 240 250 260 270 280 290 300 310 320 AT1G68 SSFGFLDQLAPINISCPLKSFAAS :::::::::::::::::::::::: RE_005 SSFGFLDQLAPINISCPLKSFAAS 310 320 |