| Code name | RE_0055 | |||
|---|---|---|---|---|
| Locus | AT1G72360 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列100%一致 | |||
| comment | 0420_塩基配列100%一致 with AT1G72360.2 | |||
| sequence |
>RE_0055_786bp ATGTGCGGAGGAGCTGTAATTTCCGATTACATAGCGCCGGAGAAGATTGCGAGATCATCTGGAAAGTCTTCCTGGAGAAGTAATGGCGTCTTTGACTGCT CAATCTACGATTTCGATGGAAATTTCGATGAATTAGAGTCCGATGAGCCATTTGTCTTCTCCTCTACTCACAAACATCATGCTTCAGGCTCAGCATCAGA TGGGAAGAAGAAACAGAGCAGTCGGTACAAAGGAATCAGAAGAAGGCCTTGGGGAAGATGGGCGGCTGAGATACGTGATCCAATCAAAGGAGTTCGAGTT TGGCTCGGGACTTTCAACACAGCTGAAGAAGCTGCAAGAGCTTATGATCTTGAAGCTAAGAGAATCCGTGGAGCCAAAGCTAAGCTCAATTTCCCTAACG AATCCTCTGGAAAGAGGAAAGCCAAGGCTAAGACTGTGCAACAGGTAGAGGAGAATCATGAGGCTGATCTTGATGTGGCGGTGGTAAGCTCAGCGCCTAG TAGTAGCTGTCTTGATTTCTTGTGGGAGGAGAATAATCCGGACACGCTTCTGATTGATACACAATGGCTCGAAGATATCATCATGGGCGATGCGAATAAG AAACATGAACCTAATGATAGTGAAGAAGCCAACAACGTTGATGCTTCTCTGCTTTCTGAAGAGCTTCTTGCTTTTGAGAACCAGACCGAATATTTCTCGC AGATGCCTTTTACGGAGGGAAACTGTGATTCCTCAACGTCTCTGAGTAGTCTCTTTGATGGAGGCAATGACATGGGTCTATGGTCC >RE_0055_translated MCGGAVISDYIAPEKIARSSGKSSWRSNGVFDCSIYDFDGNFDELESDEPFVFSSTHKHHASGSASDGKKKQSSRYKGIRRRPWGRWAAEIRDPIKGVRV WLGTFNTAEEAARAYDLEAKRIRGAKAKLNFPNESSGKRKAKAKTVQQVEENHEADLDVAVVSSAPSSSCLDFLWEENNPDTLLIDTQWLEDIIMGDANK KHEPNDSEEANNVDASLLSEELLAFENQTEYFSQMPFTEGNCDSSTSLSSLFDGGNDMGLWS |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 620/797 (77.8%)（アミノ酸配列で201/262 (76.7%)）一致しました。
AT1G72 ----------------------------------------------------------------------------------------------------
RE_005 ATGTGCGGAGGAGCTGTAATTTCCGATTACATAGCGCCGGAGAAGATTGCGAGATCATCTGGAAAGTCTTCCTGGAGAAGTAATGGCGTCTTTGACTGCT
10 20 30 40 50 60 70 80 90 100
10 20 30
AT1G72 ------------------------------------------ATGTCTCAAAGC--TTTG------------------AACTTTATCCATGGCT--AGGC
::: ::: :::: ::: : :: ::: ::::
RE_005 CAATCTACGATTTCGATGGAAATTTCGATGAATTAGAGTCCGATG------AGCCATTTGTCTTCTCCTCTACTCACAAACATCAT-----GCTTCAGGC
110 120 130 140 150 160 170 180
40 50 60 70 80 90 100 110 120 130
AT1G72 TCAGCATCAGATGGGAAGAAGAAACAGAGCAGTCGGTACAAAGGAATCAGAAGAAGGCCTTGGGGAAGATGGGCGGCTGAGATACGTGATCCAATCAAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_005 TCAGCATCAGATGGGAAGAAGAAACAGAGCAGTCGGTACAAAGGAATCAGAAGAAGGCCTTGGGGAAGATGGGCGGCTGAGATACGTGATCCAATCAAAG
190 200 210 220 230 240 250 260 270 280
140 150 160 170 180 190 200 210 220 230
AT1G72 GAGTTCGAGTTTGGCTCGGGACTTTCAACACAGCTGAAGAAGCTGCAAGAGCTTATGATCTTGAAGCTAAGAGAATCCGTGGAGCCAAAGCTAAGCTCAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_005 GAGTTCGAGTTTGGCTCGGGACTTTCAACACAGCTGAAGAAGCTGCAAGAGCTTATGATCTTGAAGCTAAGAGAATCCGTGGAGCCAAAGCTAAGCTCAA
290 300 310 320 330 340 350 360 370 380
240 250 260 270 280 290 300 310 320 330
AT1G72 TTTCCCTAACGAATCCTCTGGAAAGAGGAAAGCCAAGGCTAAGACTGTGCAACAGGTAGAGGAGAATCATGAGGCTGATCTTGATGTGGCGGTGGTAAGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_005 TTTCCCTAACGAATCCTCTGGAAAGAGGAAAGCCAAGGCTAAGACTGTGCAACAGGTAGAGGAGAATCATGAGGCTGATCTTGATGTGGCGGTGGTAAGC
390 400 410 420 430 440 450 460 470 480
340 350 360 370 380 390 400 410 420 430
AT1G72 TCAGCGCCTAGTAGTAGCTGTCTTGATTTCTTGTGGGAGGAGAATAATCCGGACACGCTTCTGATTGATACACAATGGCTCGAAGATATCATCATGGGCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_005 TCAGCGCCTAGTAGTAGCTGTCTTGATTTCTTGTGGGAGGAGAATAATCCGGACACGCTTCTGATTGATACACAATGGCTCGAAGATATCATCATGGGCG
490 500 510 520 530 540 550 560 570 580
440 450 460 470 480 490 500 510 520 530
AT1G72 ATGCGAATAAGAAACATGAACCTAATGATAGTGAAGAAGCCAACAACGTTGATGCTTCTCTGCTTTCTGAAGAGCTTCTTGCTTTTGAGAACCAGACCGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_005 ATGCGAATAAGAAACATGAACCTAATGATAGTGAAGAAGCCAACAACGTTGATGCTTCTCTGCTTTCTGAAGAGCTTCTTGCTTTTGAGAACCAGACCGA
590 600 610 620 630 640 650 660 670 680
540 550 560 570 580 590 600 610 620 630
AT1G72 ATATTTCTCGCAGATGCCTTTTACGGAGGGAAACTGTGATTCCTCAACGTCTCTGAGTAGTCTCTTTGATGGAGGCAATGACATGGGTCTATGGTCC
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_005 ATATTTCTCGCAGATGCCTTTTACGGAGGGAAACTGTGATTCCTCAACGTCTCTGAGTAGTCTCTTTGATGGAGGCAATGACATGGGTCTATGGTCC
690 700 710 720 730 740 750 760 770 780
10 20 30 40
AT1G72 ---------------------------------------------------MSQSFELYPWLGSASDGKKKQSSRYKGIRRRPWGRWAAEIRDPIKGVRV
. : . ::::::::::::::::::::::::::::::::::::::
RE_005 MCGGAVISDYIAPEKIARSSGKSSWRSNGVFDCSIYDFDGNFDELESDEPFVFSSTHKHHASGSASDGKKKQSSRYKGIRRRPWGRWAAEIRDPIKGVRV
10 20 30 40 50 60 70 80 90 100
50 60 70 80 90 100 110 120 130 140
AT1G72 WLGTFNTAEEAARAYDLEAKRIRGAKAKLNFPNESSGKRKAKAKTVQQVEENHEADLDVAVVSSAPSSSCLDFLWEENNPDTLLIDTQWLEDIIMGDANK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_005 WLGTFNTAEEAARAYDLEAKRIRGAKAKLNFPNESSGKRKAKAKTVQQVEENHEADLDVAVVSSAPSSSCLDFLWEENNPDTLLIDTQWLEDIIMGDANK
110 120 130 140 150 160 170 180 190 200
150 160 170 180 190 200 210
AT1G72 KHEPNDSEEANNVDASLLSEELLAFENQTEYFSQMPFTEGNCDSSTSLSSLFDGGNDMGLWS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_005 KHEPNDSEEANNVDASLLSEELLAFENQTEYFSQMPFTEGNCDSSTSLSSLFDGGNDMGLWS
210 220 230 240 250 260
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