| Code name | RE_0058 | |||
|---|---|---|---|---|
| Locus | AT1G75490 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列95.60%一致 | |||
| comment | 0424_アミノ酸配列70%以上一致 | |||
| sequence |
>RE_0058_591bp ATGGTTGGTGCTAATAAGAAACAACGAACCGTCCAAGCTAGTTCGAGGAAAGGTTGTATGAGAGGAAAAGGTGGACCCGATAACGCGTCTTGCACTTACA AAGGTGTTAGACAACGCACTTGGGGCAAATGGGTCGCTGAGATCCGCGAGCCTAACCGAGGAGCTCGTCTTTGGCTCGGTACCTTCGACACCTCCCGTGA AGCTGCCTTGGCTTATGACTCCGCAGCTCGTAAGCTCTATGGGCCTGAGGCTCATCTCAACCTCCCTGAGTCCTTAAGAAGTTACCCTAAAACGGCGTCG TCTCCGGCGTCCCAGACTACACCAAGCAGCAACACCGGTGGAAAAAGCAGCAGCGACTCTGAGTCGCCGTGTTCATCCAACGAGATGTCATCATGTGGAA GAGTGACAGAGGAGATATCATGGGAGCATATAAACGTGGATTTGCCGGTAATGGATGATTCTTCAATATGGGAAGAAGCTACAATGTCGTTAGGATTTCC ATGGGTTCATGAAGGAGATAATGATATTTCTCGGTTTGATACTTGTATTTCCGGTGGCTATTCTAATTGGGATTCCTTTCATTCCCCACTT >RE_0058_translated MVGANKKQRTVQASSRKGCMRGKGGPDNASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSREAALAYDSAARKLYGPEAHLNLPESLRSYPKTAS SPASQTTPSSNTGGKSSSDSESPCSSNEMSSCGRVTEEISWEHINVDLPVMDDSSIWEEATMSLGFPWVHEGDNDISRFDTCISGGYSNWDSFHSPL |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 591/618 (95.6%)（アミノ酸配列で197/206 (95.6%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT1G75 ATGTCATCCATAGAGCCAAAAGTAATGATGGTTGGTGCTAATAAGAAACAACGAACCGTCCAAGCTAGTTCGAGGAAAGGTTGTATGAGAGGAAAAGGTG
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_005 ---------------------------ATGGTTGGTGCTAATAAGAAACAACGAACCGTCCAAGCTAGTTCGAGGAAAGGTTGTATGAGAGGAAAAGGTG
10 20 30 40 50 60 70
110 120 130 140 150 160 170 180 190 200
AT1G75 GACCCGATAACGCGTCTTGCACTTACAAAGGTGTTAGACAACGCACTTGGGGCAAATGGGTCGCTGAGATCCGCGAGCCTAACCGAGGAGCTCGTCTTTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_005 GACCCGATAACGCGTCTTGCACTTACAAAGGTGTTAGACAACGCACTTGGGGCAAATGGGTCGCTGAGATCCGCGAGCCTAACCGAGGAGCTCGTCTTTG
80 90 100 110 120 130 140 150 160 170
210 220 230 240 250 260 270 280 290 300
AT1G75 GCTCGGTACCTTCGACACCTCCCGTGAAGCTGCCTTGGCTTATGACTCCGCAGCTCGTAAGCTCTATGGGCCTGAGGCTCATCTCAACCTCCCTGAGTCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_005 GCTCGGTACCTTCGACACCTCCCGTGAAGCTGCCTTGGCTTATGACTCCGCAGCTCGTAAGCTCTATGGGCCTGAGGCTCATCTCAACCTCCCTGAGTCC
180 190 200 210 220 230 240 250 260 270
310 320 330 340 350 360 370 380 390 400
AT1G75 TTAAGAAGTTACCCTAAAACGGCGTCGTCTCCGGCGTCCCAGACTACACCAAGCAGCAACACCGGTGGAAAAAGCAGCAGCGACTCTGAGTCGCCGTGTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_005 TTAAGAAGTTACCCTAAAACGGCGTCGTCTCCGGCGTCCCAGACTACACCAAGCAGCAACACCGGTGGAAAAAGCAGCAGCGACTCTGAGTCGCCGTGTT
280 290 300 310 320 330 340 350 360 370
410 420 430 440 450 460 470 480 490 500
AT1G75 CATCCAACGAGATGTCATCATGTGGAAGAGTGACAGAGGAGATATCATGGGAGCATATAAACGTGGATTTGCCGGTAATGGATGATTCTTCAATATGGGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_005 CATCCAACGAGATGTCATCATGTGGAAGAGTGACAGAGGAGATATCATGGGAGCATATAAACGTGGATTTGCCGGTAATGGATGATTCTTCAATATGGGA
380 390 400 410 420 430 440 450 460 470
510 520 530 540 550 560 570 580 590 600
AT1G75 AGAAGCTACAATGTCGTTAGGATTTCCATGGGTTCATGAAGGAGATAATGATATTTCTCGGTTTGATACTTGTATTTCCGGTGGCTATTCTAATTGGGAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_005 AGAAGCTACAATGTCGTTAGGATTTCCATGGGTTCATGAAGGAGATAATGATATTTCTCGGTTTGATACTTGTATTTCCGGTGGCTATTCTAATTGGGAT
480 490 500 510 520 530 540 550 560 570
610
AT1G75 TCCTTTCATTCCCCACTT
::::::::::::::::::
RE_005 TCCTTTCATTCCCCACTT
580 590
10 20 30 40 50 60 70 80 90 100
AT1G75 MSSIEPKVMMVGANKKQRTVQASSRKGCMRGKGGPDNASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSREAALAYDSAARKLYGPEAHLNLPES
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_005 ---------MVGANKKQRTVQASSRKGCMRGKGGPDNASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSREAALAYDSAARKLYGPEAHLNLPES
10 20 30 40 50 60 70 80 90
110 120 130 140 150 160 170 180 190 200
AT1G75 LRSYPKTASSPASQTTPSSNTGGKSSSDSESPCSSNEMSSCGRVTEEISWEHINVDLPVMDDSSIWEEATMSLGFPWVHEGDNDISRFDTCISGGYSNWD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_005 LRSYPKTASSPASQTTPSSNTGGKSSSDSESPCSSNEMSSCGRVTEEISWEHINVDLPVMDDSSIWEEATMSLGFPWVHEGDNDISRFDTCISGGYSNWD
100 110 120 130 140 150 160 170 180 190
AT1G75 SFHSPL
::::::
RE_005 SFHSPL
|
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