| Code name | RE_0061 | |||
|---|---|---|---|---|
| Locus | AT1G79700 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列96.80%一致 | |||
| comment | 0115_アミノ酸配列70%以上一致 | |||
| sequence |
>RE_0061_939bp ATGGCAAAAGTCTCTGGGAGGAGCAAGAAAACAATCGTTGACGATGAAATCAGCGATAAAACAGCGTCTGCGTCTGAGTCTGCGTCCATTGCCTTAACAT CCAAACGCAAACGTAAGTCGCCGCCTCGAAACGCTCCTCTTCAACGCAGCTCCCCTTACAGAGGCGTCACAAGGCATAGATGGACTGGGAGATACGAAGC GCATTTGTGGGATAAGAACAGCTGGAACGATACACAGACCAAGAAAGGACGTCAAGTTTATCTAGGGGCTTACGACGAAGAAGAAGCAGCAGCACGTGCC TACGACTTAGCAGCATTGAAGTACTGGGGACGAGACACACTCTTGAACTTCCCTTTGCCGAGCTATGACGAAGACGTCAAAGAAATGGAAGGCCAATCCA AGGAAGAGTATATTGGATCATTGAGAAGAAAAAGTAGTGGATTTTCTCGCGGTGTATCAAAATACAGAGGCGTTGCAAGGCATCACCATAATGGGAGATG GGAAGCTAGAATTGGAAGGGTGTTTGGTAATAAATATCTATATCTTGGAACATACGCCACGCAAGAAGAAGCAGCAATCGCCTACGACATCGCGGCAATA GAGTACCGTGGACTTAACGCCGTTACCAATTTCGACGTCAGCCGTTATCTAAACCCTAACGCCGCCGCGGATAAAGCCGATTCCGATTCTAAGCCCATTC GAAGCCCTAGTCGCGAGCCCGAATCGTCGGATGATAACAAATCTCCGAAATCAGAGGAAGTAATCGAACCATCTACATCGCCGGAAGTGATTCCAACTCG CCGGAGCTTCCCCGACGATATCCAGACGTATTTTGGGTGTCAAGATTCCGGCAAGTTAGCGACTGAGGAAGACGTAATATTCGATTGTTTCAATTCTTAT ATAAATCCTGGCTTCTATAACGAGTTTGATTATGGACCT >RE_0061_translated MAKVSGRSKKTIVDDEISDKTASASESASIALTSKRKRKSPPRNAPLQRSSPYRGVTRHRWTGRYEAHLWDKNSWNDTQTKKGRQVYLGAYDEEEAAARA YDLAALKYWGRDTLLNFPLPSYDEDVKEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAIAYDIAAI EYRGLNAVTNFDVSRYLNPNAAADKADSDSKPIRSPSREPESSDDNKSPKSEEVIEPSTSPEVIPTRRSFPDDIQTYFGCQDSGKLATEEDVIFDCFNSY INPGFYNEFDYGP |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 908/939 (96.7%)（アミノ酸配列で303/313 (96.8%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT1G79 ATGGCAAAAGTCTCTGGGAGGAGCAAGAAAACAATCGTTGACGATGAAATCAGCGATAAAACAGCGTCTGCGTCTGAGTCTGCGTCCATTGCCTTAACAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_006 ATGGCAAAAGTCTCTGGGAGGAGCAAGAAAACAATCGTTGACGATGAAATCAGCGATAAAACAGCGTCTGCGTCTGAGTCTGCGTCCATTGCCTTAACAT
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT1G79 CCAAACGCAAACGTAAGTCGCCGCCTCGAAACGCTCCTCTTCAACGCAGCTCCCCTTACAGAGGCGTCACAAGGCATAGATGGACTGGGAGATACGAAGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_006 CCAAACGCAAACGTAAGTCGCCGCCTCGAAACGCTCCTCTTCAACGCAGCTCCCCTTACAGAGGCGTCACAAGGCATAGATGGACTGGGAGATACGAAGC
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT1G79 GCATTTGTGGGATAAGAACAGCTGGAACGATACACAGACCAAGAAAGGACGTCAAGTTTATCTAGGGGCTTACGACGAAGAAGAAGCAGCAGCACGTGCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_006 GCATTTGTGGGATAAGAACAGCTGGAACGATACACAGACCAAGAAAGGACGTCAAGTTTATCTAGGGGCTTACGACGAAGAAGAAGCAGCAGCACGTGCC
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT1G79 TACGACTTAGCAGCATTGAAGTACTGGGGACGAGACACACTCTTGAACTTCCCTTTGCCGAGTTATGACGAAGACGTCAAAGAAATGGAAGGCCAATCCA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::
RE_006 TACGACTTAGCAGCATTGAAGTACTGGGGACGAGACACACTCTTGAACTTCCCTTTGCCGAGCTATGACGAAGACGTCAAAGAAATGGAAGGCCAATCCA
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT1G79 AGGAAGAGTATATTGGATCATTGAGAAGAAAAAGTAGTGGATTTTCTCGCGGTGTATCAAAATACAGAGGCGTTGCAAGGCATCACCATAATGGGAGATG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_006 AGGAAGAGTATATTGGATCATTGAGAAGAAAAAGTAGTGGATTTTCTCGCGGTGTATCAAAATACAGAGGCGTTGCAAGGCATCACCATAATGGGAGATG
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570
AT1G79 GGAAGCTAGAATTGGAAGGGTGTTT------------------------------GCCACGCAAGAAGAAGCAGCAATCGCCTACGACATCGCGGCAATA
::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::
RE_006 GGAAGCTAGAATTGGAAGGGTGTTTGGTAATAAATATCTATATCTTGGAACATACGCCACGCAAGAAGAAGCAGCAATCGCCTACGACATCGCGGCAATA
510 520 530 540 550 560 570 580 590 600
580 590 600 610 620 630 640 650 660 670
AT1G79 GAGTACCGTGGACTTAACGCCGTTACCAATTTCGACGTCAGCCGTTATCTAAACCCTAACGCCGCCGCGGATAAAGCCGATTCCGATTCTAAGCCCATTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_006 GAGTACCGTGGACTTAACGCCGTTACCAATTTCGACGTCAGCCGTTATCTAAACCCTAACGCCGCCGCGGATAAAGCCGATTCCGATTCTAAGCCCATTC
610 620 630 640 650 660 670 680 690 700
680 690 700 710 720 730 740 750 760 770
AT1G79 GAAGCCCTAGTCGCGAGCCCGAATCGTCGGATGATAACAAATCTCCGAAATCAGAGGAAGTAATCGAACCATCTACATCGCCGGAAGTGATTCCAACTCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_006 GAAGCCCTAGTCGCGAGCCCGAATCGTCGGATGATAACAAATCTCCGAAATCAGAGGAAGTAATCGAACCATCTACATCGCCGGAAGTGATTCCAACTCG
710 720 730 740 750 760 770 780 790 800
780 790 800 810 820 830 840 850 860 870
AT1G79 CCGGAGCTTCCCCGACGATATCCAGACGTATTTTGGGTGTCAAGATTCCGGCAAGTTAGCGACTGAGGAAGACGTAATATTCGATTGTTTCAATTCTTAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_006 CCGGAGCTTCCCCGACGATATCCAGACGTATTTTGGGTGTCAAGATTCCGGCAAGTTAGCGACTGAGGAAGACGTAATATTCGATTGTTTCAATTCTTAT
810 820 830 840 850 860 870 880 890 900
880 890 900
AT1G79 ATAAATCCTGGCTTCTATAACGAGTTTGATTATGGACCT
:::::::::::::::::::::::::::::::::::::::
RE_006 ATAAATCCTGGCTTCTATAACGAGTTTGATTATGGACCT
910 920 930
10 20 30 40 50 60 70 80 90 100
AT1G79 MAKVSGRSKKTIVDDEISDKTASASESASIALTSKRKRKSPPRNAPLQRSSPYRGVTRHRWTGRYEAHLWDKNSWNDTQTKKGRQVYLGAYDEEEAAARA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_006 MAKVSGRSKKTIVDDEISDKTASASESASIALTSKRKRKSPPRNAPLQRSSPYRGVTRHRWTGRYEAHLWDKNSWNDTQTKKGRQVYLGAYDEEEAAARA
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190
AT1G79 YDLAALKYWGRDTLLNFPLPSYDEDVKEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVF----------ATQEEAAIAYDIAAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::
RE_006 YDLAALKYWGRDTLLNFPLPSYDEDVKEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAIAYDIAAI
110 120 130 140 150 160 170 180 190 200
200 210 220 230 240 250 260 270 280 290
AT1G79 EYRGLNAVTNFDVSRYLNPNAAADKADSDSKPIRSPSREPESSDDNKSPKSEEVIEPSTSPEVIPTRRSFPDDIQTYFGCQDSGKLATEEDVIFDCFNSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_006 EYRGLNAVTNFDVSRYLNPNAAADKADSDSKPIRSPSREPESSDDNKSPKSEEVIEPSTSPEVIPTRRSFPDDIQTYFGCQDSGKLATEEDVIFDCFNSY
210 220 230 240 250 260 270 280 290 300
300
AT1G79 INPGFYNEFDYGP
:::::::::::::
RE_006 INPGFYNEFDYGP
310
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