◆◆◆RE_0068 detail◆◆◆

Code name	RE_0068
Locus	AT2G28550
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.30%一致
comment	0311_アミノ酸配列70%以上一致
sequence	>RE_0068_1347bp ATGTTGGATCTTAACCTCAACGCTGATTCTCCCGAGTCGACTCAGTACGGTGGTGACTCATACTTAGATCGGCAGACATCAGACAACTCCGCCGGGAATC GAGTGGAAGAGTCCGGTACATCGACGTCGTCAGTTATCAATGCCGATGGAGACGAAGACTCTTGCTCTACTCGAGCTTTCACTCTCAGTTTCGATATTTT AAAAGTCGGAAGTAGTAGCGGCGGAGACGAAAGCCCCGCCGCTTCAGCTTCCGTTACTAAAGAGTTTTTTCCGGTGAGTGGAGACTGTGGACATCTACGA GATGTTGAAGGACCATCAAGCTCTAGAAACTGGATAGATCTTTCTTTTGACCGTATTGGTGACGGAGAAACGAAATTGGTAACTCCGGTTCCGACTCCGG CTCCGGTTCCGGCTCAGGTTAAAAAGAGTCGGAGAGGACCAAGGTCTAGAAGTTCACAGTATAGAGGAGTTACTTTTTATAGAAGAACTGGTCGATGGGA GTCACATATTTGGGATTGTGGGAAACAAGTTTATTTAGGTGGTTTCGACACTGCTCATGCTGCAGCTAGAGCTTATGATCGAGCTGCTATTAAATTTGGA GGTGTTGATGCTGATATCAACTTTACTCTTGGTGATTATGAGGAAGATATGAAACAGGTACAAAACTTGAGTAAGGAAGAGTTTGTGCATATACTGCGTA GACTGAGCACGGGGTTTTCGCGGGGGAGTTCGAAGTATCGAGGGGTTACGTTACACAAATGTGGTAGATGGGAAGCTAGGATGGGGCAGTTTCTTGGTAA AAAGGCTTATGACAAGGCTGCAATCAACACTAATGGTAGAGAAGCAGTCACGAACTTCGAGATGAGTTCATACCAAAATGAGATTAACTCTGAGAGCAAT AACTCTGAGATTGACCTCAACTTGGGAATCTCTTTATCGACCGGTAATGCGCCAAAGCAAAATGGGAGGCTCTTTCACTTCCCTTCTAATACTTATGAAA CTCAGCGTGGAGTTAGCTTGAGGATAGATAACGAATACATGGGAAAGCCGGTGAATACACCTCTTCCTTATGGATCCTCGGATCATCGCCTTTACTGGAA CGGAGCATGCCCGAGTTATAATAATCCCGCCGAGGGAAGAGCAACAGAAAAGAGAAGTGAAGCTGAAGGGATGATGAGTAACTGGGGATGGCAGAGACCG GGGCAAACAAGCGCCGTGAGACCGCAGCCACCGGGACCACAACCACCACCATTGTTCTCAGTTGCAGCAGCATCATCAGGATTCTCACATTTCCGGCCAC AACCTCCCAATGACAATGCAACACGTGGTTACTTTTATCCACACCCT >RE_0068_translated MLDLNLNADSPESTQYGGDSYLDRQTSDNSAGNRVEESGTSTSSVINADGDEDSCSTRAFTLSFDILKVGSSSGGDESPAASASVTKEFFPVSGDCGHLR DVEGPSSSRNWIDLSFDRIGDGETKLVTPVPTPAPVPAQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFG GVDADINFTLGDYEEDMKQVQNLSKEEFVHILRRLSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKAYDKAAINTNGREAVTNFEMSSYQNEINSESN NSEIDLNLGISLSTGNAPKQNGRLFHFPSNTYETQRGVSLRIDNEYMGKPVNTPLPYGSSDHRLYWNGACPSYNNPAEGRATEKRSEAEGMMSNWGWQRP GQTSAVRPQPPGPQPPPLFSVAAASSGFSHFRPQPPNDNATRGYFYPHP
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1344/1347 (99.8%)（アミノ酸配列で446/449 (99.3%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT2G28 ATGTTGGATCTTAACCTCAACGCTGATTCTCCCGAGTCGACTCAGTACGGTGGTGACTCATACTTAGATCGGCAGACATCAGACAACTCCGCCGGGAATC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_006 ATGTTGGATCTTAACCTCAACGCTGATTCTCCCGAGTCGACTCAGTACGGTGGTGACTCATACTTAGATCGGCAGACATCAGACAACTCCGCCGGGAATC 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT2G28 GAGTGGAAGAGTCCGGTACATCGACGTCGTCAGTTATCAATGCCGATGGAGACGAAGACTCTTGCTCTACTCGAGCTTTCACTCTCAGTTTCGATATTTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_006 GAGTGGAAGAGTCCGGTACATCGACGTCGTCAGTTATCAATGCCGATGGAGACGAAGACTCTTGCTCTACTCGAGCTTTCACTCTCAGTTTCGATATTTT 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT2G28 AAAAGTCGGAAGTAGTAGCGGCGGAGACGAAAGCCCCGCCGCTTCAGCTTCCGTTACTAAAGAGTTTTTTCCGGTGAGTGGAGACTGTGGACATCTACGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_006 AAAAGTCGGAAGTAGTAGCGGCGGAGACGAAAGCCCCGCCGCTTCAGCTTCCGTTACTAAAGAGTTTTTTCCGGTGAGTGGAGACTGTGGACATCTACGA 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT2G28 GATGTTGAAGGATCATCAAGCTCTAGAAACTGGATAGATCTTTCTTTTGACCGTATTGGTGACGGAGAAACGAAATTGGTAACTCCGGTTCCGACTCCGG :::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_006 GATGTTGAAGGACCATCAAGCTCTAGAAACTGGATAGATCTTTCTTTTGACCGTATTGGTGACGGAGAAACGAAATTGGTAACTCCGGTTCCGACTCCGG 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT2G28 CTCCGGTTCCGGCTCAGGTTAAAAAGAGTCGGAGAGGACCAAGGTCTAGAAGTTCACAGTATAGAGGAGTTACTTTTTATAGAAGAACTGGTCGATGGGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_006 CTCCGGTTCCGGCTCAGGTTAAAAAGAGTCGGAGAGGACCAAGGTCTAGAAGTTCACAGTATAGAGGAGTTACTTTTTATAGAAGAACTGGTCGATGGGA 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT2G28 GTCACATATTTGGGATTGTGGGAAACAAGTTTATTTAGGTGGTTTCGACACTGCTCATGCTGCAGCTAGAGCTTATGATCGAGCTGCTATTAAATTTAGA ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :: RE_006 GTCACATATTTGGGATTGTGGGAAACAAGTTTATTTAGGTGGTTTCGACACTGCTCATGCTGCAGCTAGAGCTTATGATCGAGCTGCTATTAAATTTGGA 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT2G28 GGTGTTGATGCTGATATCAACTTTACTCTTGGTGATTATGAGGAAGATATGAAACAGGTACAAAACTTGAGTAAGGAAGAGTTTGTGCATATACTGCGTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_006 GGTGTTGATGCTGATATCAACTTTACTCTTGGTGATTATGAGGAAGATATGAAACAGGTACAAAACTTGAGTAAGGAAGAGTTTGTGCATATACTGCGTA 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT2G28 GACAGAGCACGGGGTTTTCGCGGGGGAGTTCGAAGTATCGAGGGGTTACGTTACACAAATGTGGTAGATGGGAAGCTAGGATGGGGCAGTTTCTTGGTAA ::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_006 GACTGAGCACGGGGTTTTCGCGGGGGAGTTCGAAGTATCGAGGGGTTACGTTACACAAATGTGGTAGATGGGAAGCTAGGATGGGGCAGTTTCTTGGTAA 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT2G28 AAAGGCTTATGACAAGGCTGCAATCAACACTAATGGTAGAGAAGCAGTCACGAACTTCGAGATGAGTTCATACCAAAATGAGATTAACTCTGAGAGCAAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_006 AAAGGCTTATGACAAGGCTGCAATCAACACTAATGGTAGAGAAGCAGTCACGAACTTCGAGATGAGTTCATACCAAAATGAGATTAACTCTGAGAGCAAT 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT2G28 AACTCTGAGATTGACCTCAACTTGGGAATCTCTTTATCGACCGGTAATGCGCCAAAGCAAAATGGGAGGCTCTTTCACTTCCCTTCTAATACTTATGAAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_006 AACTCTGAGATTGACCTCAACTTGGGAATCTCTTTATCGACCGGTAATGCGCCAAAGCAAAATGGGAGGCTCTTTCACTTCCCTTCTAATACTTATGAAA 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT2G28 CTCAGCGTGGAGTTAGCTTGAGGATAGATAACGAATACATGGGAAAGCCGGTGAATACACCTCTTCCTTATGGATCCTCGGATCATCGCCTTTACTGGAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_006 CTCAGCGTGGAGTTAGCTTGAGGATAGATAACGAATACATGGGAAAGCCGGTGAATACACCTCTTCCTTATGGATCCTCGGATCATCGCCTTTACTGGAA 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT2G28 CGGAGCATGCCCGAGTTATAATAATCCCGCCGAGGGAAGAGCAACAGAAAAGAGAAGTGAAGCTGAAGGGATGATGAGTAACTGGGGATGGCAGAGACCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_006 CGGAGCATGCCCGAGTTATAATAATCCCGCCGAGGGAAGAGCAACAGAAAAGAGAAGTGAAGCTGAAGGGATGATGAGTAACTGGGGATGGCAGAGACCG 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 AT2G28 GGGCAAACAAGCGCCGTGAGACCGCAGCCACCGGGACCACAACCACCACCATTGTTCTCAGTTGCAGCAGCATCATCAGGATTCTCACATTTCCGGCCAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_006 GGGCAAACAAGCGCCGTGAGACCGCAGCCACCGGGACCACAACCACCACCATTGTTCTCAGTTGCAGCAGCATCATCAGGATTCTCACATTTCCGGCCAC 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 AT2G28 AACCTCCCAATGACAATGCAACACGTGGTTACTTTTATCCACACCCT ::::::::::::::::::::::::::::::::::::::::::::::: RE_006 AACCTCCCAATGACAATGCAACACGTGGTTACTTTTATCCACACCCT 1310 1320 1330 1340 10 20 30 40 50 60 70 80 90 100 AT2G28 MLDLNLNADSPESTQYGGDSYLDRQTSDNSAGNRVEESGTSTSSVINADGDEDSCSTRAFTLSFDILKVGSSSGGDESPAASASVTKEFFPVSGDCGHLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_006 MLDLNLNADSPESTQYGGDSYLDRQTSDNSAGNRVEESGTSTSSVINADGDEDSCSTRAFTLSFDILKVGSSSGGDESPAASASVTKEFFPVSGDCGHLR 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT2G28 DVEGSSSSRNWIDLSFDRIGDGETKLVTPVPTPAPVPAQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFR :::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_006 DVEGPSSSRNWIDLSFDRIGDGETKLVTPVPTPAPVPAQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFG 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT2G28 GVDADINFTLGDYEEDMKQVQNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKAYDKAAINTNGREAVTNFEMSSYQNEINSESN :::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_006 GVDADINFTLGDYEEDMKQVQNLSKEEFVHILRRLSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKAYDKAAINTNGREAVTNFEMSSYQNEINSESN 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT2G28 NSEIDLNLGISLSTGNAPKQNGRLFHFPSNTYETQRGVSLRIDNEYMGKPVNTPLPYGSSDHRLYWNGACPSYNNPAEGRATEKRSEAEGMMSNWGWQRP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_006 NSEIDLNLGISLSTGNAPKQNGRLFHFPSNTYETQRGVSLRIDNEYMGKPVNTPLPYGSSDHRLYWNGACPSYNNPAEGRATEKRSEAEGMMSNWGWQRP 310 320 330 340 350 360 370 380 390 400 410 420 430 440 AT2G28 GQTSAVRPQPPGPQPPPLFSVAAASSGFSHFRPQPPNDNATRGYFYPHP ::::::::::::::::::::::::::::::::::::::::::::::::: RE_006 GQTSAVRPQPPGPQPPPLFSVAAASSGFSHFRPQPPNDNATRGYFYPHP 410 420 430 440

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