| Code name | RE_0069 | |||
|---|---|---|---|---|
| Locus | AT2G31230 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列97.10%一致 | |||
| comment | 0115_アミノ酸配列70%以上一致 | |||
| sequence |
>RE_0069_708bp ATGTATTCATCTCCAAGTTCTTGGAGCTCATCACAAGAATCACTCTTATGGAACGAGAGCTGTTTCTTGGATCAATCATCTGAACCTCAAGCCTTCTTTT GCCCTAATTATGATTACTCCGATGACTTTTTCTCATTTGAGTCACCGGAGATGATGATTAAGGAAGAAATTCAAAACGGCGACGTTTCTAACTCCGAAGA AGAAGAAAAGGTTGGAATTGATGAAGAAAGATCATACAGAGGAGTGAGGAAAAGGCCGTGGGGGAAATTTGCAGCGGAGATAAGAGATTCAACGAGGAAT GGAATTAGGGTTTGGCTCGGGACATTTGACAAAGCCGAGGAAGCCGCTCTTGCTTATGATCAAGCGGCTTTCGCCACAAAAGGATCTCTTGCAACACTTA ATTTCCCGGTGGAAGTGGTTAGAGAGTCGCTAAAGAAAATGGAGAATGTGAATCTTCATGATGGAGGATCTCCGGTTATGGCCTTGAAGAGAAAACATTC TCTTCGAAACCGGCCTAGAGGGAAAAAGCGATCCTCTTCTTCTTCTTCTTCTTCTTCTAATTCTTCTTCTTGCTCTTCTTCTTCGTCTACTTCTTCAACA TCAAGAAGTAGTAGTAAGCAGAGTGTTGTGAAGCAAGAAAGTGGTACACTTGTGGTTTTTGAAGATTTAGGTGCTGAGTATTTAGAACAACTTCTTATGA GCTCATGT >RE_0069_translated MYSSPSSWSSSQESLLWNESCFLDQSSEPQAFFCPNYDYSDDFFSFESPEMMIKEEIQNGDVSNSEEEEKVGIDEERSYRGVRKRPWGKFAAEIRDSTRN GIRVWLGTFDKAEEAALAYDQAAFATKGSLATLNFPVEVVRESLKKMENVNLHDGGSPVMALKRKHSLRNRPRGKKRSSSSSSSSSNSSSCSSSSSTSST SRSSSKQSVVKQESGTLVVFEDLGAEYLEQLLMSSC |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 708/729 (97.1%)（アミノ酸配列で236/243 (97.1%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT2G31 ATGGAATATTCCCAATCTTCCATGTATTCATCTCCAAGTTCTTGGAGCTCATCACAAGAATCACTCTTATGGAACGAGAGCTGTTTCTTGGATCAATCAT
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_006 ---------------------ATGTATTCATCTCCAAGTTCTTGGAGCTCATCACAAGAATCACTCTTATGGAACGAGAGCTGTTTCTTGGATCAATCAT
10 20 30 40 50 60 70
110 120 130 140 150 160 170 180 190 200
AT2G31 CTGAACCTCAAGCCTTCTTTTGCCCTAATTATGATTACTCCGATGACTTTTTCTCATTTGAGTCACCGGAGATGATGATTAAGGAAGAAATTCAAAACGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_006 CTGAACCTCAAGCCTTCTTTTGCCCTAATTATGATTACTCCGATGACTTTTTCTCATTTGAGTCACCGGAGATGATGATTAAGGAAGAAATTCAAAACGG
80 90 100 110 120 130 140 150 160 170
210 220 230 240 250 260 270 280 290 300
AT2G31 CGACGTTTCTAACTCCGAAGAAGAAGAAAAGGTTGGAATTGATGAAGAAAGATCATACAGAGGAGTGAGGAAAAGGCCGTGGGGGAAATTTGCAGCGGAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_006 CGACGTTTCTAACTCCGAAGAAGAAGAAAAGGTTGGAATTGATGAAGAAAGATCATACAGAGGAGTGAGGAAAAGGCCGTGGGGGAAATTTGCAGCGGAG
180 190 200 210 220 230 240 250 260 270
310 320 330 340 350 360 370 380 390 400
AT2G31 ATAAGAGATTCAACGAGGAATGGAATTAGGGTTTGGCTCGGGACATTTGACAAAGCCGAGGAAGCCGCTCTTGCTTATGATCAAGCGGCTTTCGCCACAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_006 ATAAGAGATTCAACGAGGAATGGAATTAGGGTTTGGCTCGGGACATTTGACAAAGCCGAGGAAGCCGCTCTTGCTTATGATCAAGCGGCTTTCGCCACAA
280 290 300 310 320 330 340 350 360 370
410 420 430 440 450 460 470 480 490 500
AT2G31 AAGGATCTCTTGCAACACTTAATTTCCCGGTGGAAGTGGTTAGAGAGTCGCTAAAGAAAATGGAGAATGTGAATCTTCATGATGGAGGATCTCCGGTTAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_006 AAGGATCTCTTGCAACACTTAATTTCCCGGTGGAAGTGGTTAGAGAGTCGCTAAAGAAAATGGAGAATGTGAATCTTCATGATGGAGGATCTCCGGTTAT
380 390 400 410 420 430 440 450 460 470
510 520 530 540 550 560 570 580 590 600
AT2G31 GGCCTTGAAGAGAAAACATTCTCTTCGAAACCGGCCTAGAGGGAAAAAGCGATCCTCTTCTTCTTCTTCTTCTTCTTCTAATTCTTCTTCTTGCTCTTCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_006 GGCCTTGAAGAGAAAACATTCTCTTCGAAACCGGCCTAGAGGGAAAAAGCGATCCTCTTCTTCTTCTTCTTCTTCTTCTAATTCTTCTTCTTGCTCTTCT
480 490 500 510 520 530 540 550 560 570
610 620 630 640 650 660 670 680 690 700
AT2G31 TCTTCGTCTACTTCTTCAACATCAAGAAGTAGTAGTAAGCAGAGTGTTGTGAAGCAAGAAAGTGGTACACTTGTGGTTTTTGAAGATTTAGGTGCTGAGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_006 TCTTCGTCTACTTCTTCAACATCAAGAAGTAGTAGTAAGCAGAGTGTTGTGAAGCAAGAAAGTGGTACACTTGTGGTTTTTGAAGATTTAGGTGCTGAGT
580 590 600 610 620 630 640 650 660 670
710 720
AT2G31 ATTTAGAACAACTTCTTATGAGCTCATGT
:::::::::::::::::::::::::::::
RE_006 ATTTAGAACAACTTCTTATGAGCTCATGT
680 690 700
10 20 30 40 50 60 70 80 90 100
AT2G31 MEYSQSSMYSSPSSWSSSQESLLWNESCFLDQSSEPQAFFCPNYDYSDDFFSFESPEMMIKEEIQNGDVSNSEEEEKVGIDEERSYRGVRKRPWGKFAAE
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_006 -------MYSSPSSWSSSQESLLWNESCFLDQSSEPQAFFCPNYDYSDDFFSFESPEMMIKEEIQNGDVSNSEEEEKVGIDEERSYRGVRKRPWGKFAAE
10 20 30 40 50 60 70 80 90
110 120 130 140 150 160 170 180 190 200
AT2G31 IRDSTRNGIRVWLGTFDKAEEAALAYDQAAFATKGSLATLNFPVEVVRESLKKMENVNLHDGGSPVMALKRKHSLRNRPRGKKRSSSSSSSSSNSSSCSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_006 IRDSTRNGIRVWLGTFDKAEEAALAYDQAAFATKGSLATLNFPVEVVRESLKKMENVNLHDGGSPVMALKRKHSLRNRPRGKKRSSSSSSSSSNSSSCSS
100 110 120 130 140 150 160 170 180 190
210 220 230 240
AT2G31 SSSTSSTSRSSSKQSVVKQESGTLVVFEDLGAEYLEQLLMSSC
:::::::::::::::::::::::::::::::::::::::::::
RE_006 SSSTSSTSRSSSKQSVVKQESGTLVVFEDLGAEYLEQLLMSSC
200 210 220 230
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