| Code name | RE_0096 | |||
|---|---|---|---|---|
| Locus | AT3G60490 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.60%一致 | |||
| comment | 0424_アミノ酸配列70%以上一致 | |||
| sequence |
>RE_0096_768bp ATGGGAAAACAAATCAACATAGAGAGTAGTGCTACTCATCATCAAGACAATATTGTTTCCGTTATAACAGCCACGATATCCTCCTCCTCCGTCGTAACGT CTTCGTCAGACTCTTGGTCTACCTCCAAAAGATCGTTAGTGCAAGACAATGACTCCGGAGGGAAACGGCGGAAGAGCAACGTTAGTGATGATAACAAGAA TCCGACGTCGTATAGAGGAGTGAGGATGAGGAGTTGGGGAAAATGGGTGTCGGAGATTAGAGAGCCGAGGAAGAAATCAAGAATATGGCTTGGCACTTAT CCAACGGCAGAGATGGCAGCTCGTGCTCATGATGTGGCGGCTTTAGCTATTAAAGGCAACTCCGGTTTTCTTAATTTCCCTGAATTATCCGGTTTGCTTC CTCGTCCGGTTAGCTGCTCTCCTAAGGATATACAAGCTGCAGCTACCAAAGCCGCCGAAGCAACCACGTGGCACAAACCGGTTATCGATAAGAAATTAGC TGATGAGCTAAGCCACTATGAGTTGTTGTCTACCGCTCAGTCTTCGACTTCTAGTAGTTTCGTGTTTTCTTCGGACACGTCGGAGACTTCTAGTACGGAC AAGGAAAGCAACGAAGAGACGGTGTTTGATTTGCCGGACCTTTTCACGGACGGGCTTATGAACCCAAACGATGCGTTTTGTTTATGCAACGGCACCTTTA CGTGGCAGCTTTACGGAGAGGAGGATGTAGGGTTCAGGTTTGAAGAGCCGTTTAATTGGCAAAATGAC >RE_0096_translated MGKQINIESSATHHQDNIVSVITATISSSSVVTSSSDSWSTSKRSLVQDNDSGGKRRKSNVSDDNKNPTSYRGVRMRSWGKWVSEIREPRKKSRIWLGTY PTAEMAARAHDVAALAIKGNSGFLNFPELSGLLPRPVSCSPKDIQAAATKAAEATTWHKPVIDKKLADELSHYELLSTAQSSTSSSFVFSSDTSETSSTD KESNEETVFDLPDLFTDGLMNPNDAFCLCNGTFTWQLYGEEDVGFRFEEPFNWQND |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 767/768 (99.9%)（アミノ酸配列で255/256 (99.6%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT3G60 ATGGGAAAACAAATCAACATAGAGAGTAGTGCTACTCATCATCAAGACAATATTGTTTCCGTTATAACAGCCACGATATCCTCCTCCTCCGTCGTAACGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_009 ATGGGAAAACAAATCAACATAGAGAGTAGTGCTACTCATCATCAAGACAATATTGTTTCCGTTATAACAGCCACGATATCCTCCTCCTCCGTCGTAACGT
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT3G60 CTTCGTCAGACTCTTGGTCTACCTCCAAAAGATCGTTAGTGCAAGACAATGACTCCGGAGGGAAACGGCGGAAGAGCAACGTTAGTGATGATAACAAGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_009 CTTCGTCAGACTCTTGGTCTACCTCCAAAAGATCGTTAGTGCAAGACAATGACTCCGGAGGGAAACGGCGGAAGAGCAACGTTAGTGATGATAACAAGAA
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT3G60 TCCGACGTCGTATAGAGGAGTGAGGATGAGGAGTTGGGGAAAATGGGTGTCGGAGATTAGAGAGCCGAGGAAGAAATCAAGAATATGGCTTGGCACTTAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_009 TCCGACGTCGTATAGAGGAGTGAGGATGAGGAGTTGGGGAAAATGGGTGTCGGAGATTAGAGAGCCGAGGAAGAAATCAAGAATATGGCTTGGCACTTAT
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT3G60 CCAACGGCAGAGATGGCAGCTCGTGCTCATGATGTGGCGGCTTTAGCTATTAAAGGCAACTCCGGTTTTCTTAATTTCCCTGAATTATCCGGTTTGCTTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_009 CCAACGGCAGAGATGGCAGCTCGTGCTCATGATGTGGCGGCTTTAGCTATTAAAGGCAACTCCGGTTTTCTTAATTTCCCTGAATTATCCGGTTTGCTTC
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT3G60 CTCGTCCGGTTAGCTGCTCTCCTAAGGATATACAAGCTGCAGCTACCAAAGCCGCCGAAGCAACCACGTGGCACAAACCGGTTATCGATAAGAAATTAGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_009 CTCGTCCGGTTAGCTGCTCTCCTAAGGATATACAAGCTGCAGCTACCAAAGCCGCCGAAGCAACCACGTGGCACAAACCGGTTATCGATAAGAAATTAGC
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT3G60 TGATGAGCTAAGCCACTCTGAGTTGTTGTCTACCGCTCAGTCTTCGACTTCTAGTAGTTTCGTGTTTTCTTCGGACACGTCGGAGACTTCTAGTACGGAC
::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_009 TGATGAGCTAAGCCACTATGAGTTGTTGTCTACCGCTCAGTCTTCGACTTCTAGTAGTTTCGTGTTTTCTTCGGACACGTCGGAGACTTCTAGTACGGAC
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660 670 680 690 700
AT3G60 AAGGAAAGCAACGAAGAGACGGTGTTTGATTTGCCGGACCTTTTCACGGACGGGCTTATGAACCCAAACGATGCGTTTTGTTTATGCAACGGCACCTTTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_009 AAGGAAAGCAACGAAGAGACGGTGTTTGATTTGCCGGACCTTTTCACGGACGGGCTTATGAACCCAAACGATGCGTTTTGTTTATGCAACGGCACCTTTA
610 620 630 640 650 660 670 680 690 700
710 720 730 740 750 760
AT3G60 CGTGGCAGCTTTACGGAGAGGAGGATGTAGGGTTCAGGTTTGAAGAGCCGTTTAATTGGCAAAATGAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_009 CGTGGCAGCTTTACGGAGAGGAGGATGTAGGGTTCAGGTTTGAAGAGCCGTTTAATTGGCAAAATGAC
710 720 730 740 750 760
10 20 30 40 50 60 70 80 90 100
AT3G60 MGKQINIESSATHHQDNIVSVITATISSSSVVTSSSDSWSTSKRSLVQDNDSGGKRRKSNVSDDNKNPTSYRGVRMRSWGKWVSEIREPRKKSRIWLGTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_009 MGKQINIESSATHHQDNIVSVITATISSSSVVTSSSDSWSTSKRSLVQDNDSGGKRRKSNVSDDNKNPTSYRGVRMRSWGKWVSEIREPRKKSRIWLGTY
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT3G60 PTAEMAARAHDVAALAIKGNSGFLNFPELSGLLPRPVSCSPKDIQAAATKAAEATTWHKPVIDKKLADELSHSELLSTAQSSTSSSFVFSSDTSETSSTD
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::
RE_009 PTAEMAARAHDVAALAIKGNSGFLNFPELSGLLPRPVSCSPKDIQAAATKAAEATTWHKPVIDKKLADELSHYELLSTAQSSTSSSFVFSSDTSETSSTD
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250
AT3G60 KESNEETVFDLPDLFTDGLMNPNDAFCLCNGTFTWQLYGEEDVGFRFEEPFNWQND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_009 KESNEETVFDLPDLFTDGLMNPNDAFCLCNGTFTWQLYGEEDVGFRFEEPFNWQND
210 220 230 240 250
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