| Code name | RE_0105 | |||
|---|---|---|---|---|
| Locus | AT4G25470 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.50%一致 | |||
| comment | 0520_third_0105_FR_25 | |||
| sequence |
>RE_0105_648bp ATGAACTCATTTTCTGCCTTTTCTGAAATGTTTGGCTCCGATTACGAGTCTCCGGTTTCCTCAGGCGGTGATTACAGTCCGAAGCTTGCCACGAGCTGCC TCAAGAAACCAGCGGGAAGGAAGAAGTTTCGTGAGACTCGTCACCCAATTTACAGAGGAGTTCGTCAAAGAAACTCCGGTAAGTGGGTGTGTGAGTTGAG AGAGCCAAACAAGAAAACGAGGATTTGGCTCGGGACTTTCCAAACCGCTGAGATGGCAGCTCGTGCTCACGACGTCGCCGCCATAGCTCTCCGCGGCAGA TCTGCCTGTCTCAATTTCGCTGACTCGGCTTGGCGGCTACGAATCCCGGAATCAACCTGTGCCAAGGAAATCCAAAAGGCGGCGGCTGAAGCCGCGTTGA ATTTTCAAGATGAGATGTGTCATATGACGACGGATGCTCATGGTCTTGACATGGAGGAGACCTTGGTGGAGGCTATTTATACGCCGGAACAGAGCCAAGA TGCGTTTTATATGGATGAAGAGGCGATGTTGGGGATGTCTAGTTTGTTGGATAACATGGCCGAAGGGATGCTTTTACCGTCGCCGTCGGTTCAATGGAAC TATAATTTTGATGTCGAGGGAGATGATGACGTGTCCTTATGGAGCTAT >RE_0105_translated MNSFSAFSEMFGSDYESPVSSGGDYSPKLATSCLKKPAGRKKFRETRHPIYRGVRQRNSGKWVCELREPNKKTRIWLGTFQTAEMAARAHDVAAIALRGR SACLNFADSAWRLRIPESTCAKEIQKAAAEAALNFQDEMCHMTTDAHGLDMEETLVEAIYTPEQSQDAFYMDEEAMLGMSSLLDNMAEGMLLPSPSVQWN YNFDVEGDDDVSLWSY |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 646/648 (99.7%)（アミノ酸配列で215/216 (99.5%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT4G25 ATGAACTCATTTTCTGCCTTTTCTGAAATGTTTGGCTCCGATTACGAGTCTCCGGTTTCCTCAGGCGGTGATTACAGTCCGAAGCTTGCCACGAGCTGCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_010 ATGAACTCATTTTCTGCCTTTTCTGAAATGTTTGGCTCCGATTACGAGTCTCCGGTTTCCTCAGGCGGTGATTACAGTCCGAAGCTTGCCACGAGCTGCC
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT4G25 CCAAGAAACCAGCGGGAAGGAAGAAGTTTCGTGAGACTCGTCACCCAATTTACAGAGGAGTTCGTCAAAGAAACTCCGGTAAGTGGGTGTGTGAGTTGAG
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_010 TCAAGAAACCAGCGGGAAGGAAGAAGTTTCGTGAGACTCGTCACCCAATTTACAGAGGAGTTCGTCAAAGAAACTCCGGTAAGTGGGTGTGTGAGTTGAG
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT4G25 AGAGCCAAACAAGAAAACGAGGATTTGGCTCGGGACTTTCCAAACCGCTGAGATGGCAGCTCGTGCTCACGACGTCGCCGCCATAGCTCTCCGTGGCAGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::
RE_010 AGAGCCAAACAAGAAAACGAGGATTTGGCTCGGGACTTTCCAAACCGCTGAGATGGCAGCTCGTGCTCACGACGTCGCCGCCATAGCTCTCCGCGGCAGA
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT4G25 TCTGCCTGTCTCAATTTCGCTGACTCGGCTTGGCGGCTACGAATCCCGGAATCAACCTGTGCCAAGGAAATCCAAAAGGCGGCGGCTGAAGCCGCGTTGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_010 TCTGCCTGTCTCAATTTCGCTGACTCGGCTTGGCGGCTACGAATCCCGGAATCAACCTGTGCCAAGGAAATCCAAAAGGCGGCGGCTGAAGCCGCGTTGA
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT4G25 ATTTTCAAGATGAGATGTGTCATATGACGACGGATGCTCATGGTCTTGACATGGAGGAGACCTTGGTGGAGGCTATTTATACGCCGGAACAGAGCCAAGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_010 ATTTTCAAGATGAGATGTGTCATATGACGACGGATGCTCATGGTCTTGACATGGAGGAGACCTTGGTGGAGGCTATTTATACGCCGGAACAGAGCCAAGA
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT4G25 TGCGTTTTATATGGATGAAGAGGCGATGTTGGGGATGTCTAGTTTGTTGGATAACATGGCCGAAGGGATGCTTTTACCGTCGCCGTCGGTTCAATGGAAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_010 TGCGTTTTATATGGATGAAGAGGCGATGTTGGGGATGTCTAGTTTGTTGGATAACATGGCCGAAGGGATGCTTTTACCGTCGCCGTCGGTTCAATGGAAC
510 520 530 540 550 560 570 580 590 600
610 620 630 640
AT4G25 TATAATTTTGATGTCGAGGGAGATGATGACGTGTCCTTATGGAGCTAT
::::::::::::::::::::::::::::::::::::::::::::::::
RE_010 TATAATTTTGATGTCGAGGGAGATGATGACGTGTCCTTATGGAGCTAT
610 620 630 640
10 20 30 40 50 60 70 80 90 100
AT4G25 MNSFSAFSEMFGSDYESPVSSGGDYSPKLATSCPKKPAGRKKFRETRHPIYRGVRQRNSGKWVCELREPNKKTRIWLGTFQTAEMAARAHDVAAIALRGR
::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_010 MNSFSAFSEMFGSDYESPVSSGGDYSPKLATSCLKKPAGRKKFRETRHPIYRGVRQRNSGKWVCELREPNKKTRIWLGTFQTAEMAARAHDVAAIALRGR
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT4G25 SACLNFADSAWRLRIPESTCAKEIQKAAAEAALNFQDEMCHMTTDAHGLDMEETLVEAIYTPEQSQDAFYMDEEAMLGMSSLLDNMAEGMLLPSPSVQWN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_010 SACLNFADSAWRLRIPESTCAKEIQKAAAEAALNFQDEMCHMTTDAHGLDMEETLVEAIYTPEQSQDAFYMDEEAMLGMSSLLDNMAEGMLLPSPSVQWN
110 120 130 140 150 160 170 180 190 200
210
AT4G25 YNFDVEGDDDVSLWSY
::::::::::::::::
RE_010 YNFDVEGDDDVSLWSY
210
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