| Code name | RE_0110 | |||
|---|---|---|---|---|
| Locus | AT4G31060 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列98.40%一致 | |||
| comment | 0229_アミノ酸配列70%以上一致 | |||
| sequence |
>RE_0110_552bp ATGCCACCCTCTCCTCCTAAATCTCCTTTTATTAGCTCTTCACTCAAAGGAGCTCATGAAGATCGCAAATTTAAATGCTATAGGGGTGTCCGAAAGAGGT CTTGGGGCAAATGGGTGTCTGAAATCAGAGTTCCAAAGACTGGACGACGAATATGGCTAGGTTCATACGATGCTCCAGAGAAGGCAGCTAGAGCCTATGA TGCTGCTTTGTTCTGTATTAGGGGTGAGAAGGGAGTTTACAATTTTCCCACTGATAAAAAGCCGCAGCTTCCAGAAGGTTCTGTCCGGCCTCTGTCCAAG CTCGACATACAGACAATAGCAACAAACTATGCTTCATCAGTTGTGCATGTACCTTCCCATGCCACCACACTCCCGGCAACAACCCAGGTTCCCTCTGAAG TTCCTGCTTCCTCTGATGTTTCTGCTTCTACTGAGATTACAGAGATGGTCGATGAATATTATCTCCCAACCGATGCAACTGCAGAATCAATATTCTCAGT TGAAGACTTACAACTGGACAGTTTCCTCATGATGGACATTGATTGGATAAAC >RE_0110_translated MPPSPPKSPFISSSLKGAHEDRKFKCYRGVRKRSWGKWVSEIRVPKTGRRIWLGSYDAPEKAARAYDAALFCIRGEKGVYNFPTDKKPQLPEGSVRPLSK LDIQTIATNYASSVVHVPSHATTLPATTQVPSEVPASSDVSASTEITEMVDEYYLPTDATAESIFSVEDLQLDSFLMMDIDWIN |
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| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 552/561 (98.4%)（アミノ酸配列で184/187 (98.4%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT4G31 ATGCCACCCTCTCCTCCTAAATCTCCTTTTATTAGCTCTTCACTCAAAGGAGCTCATGAAGATCGCAAATTTAAATGCTATAGGGGTGTCCGAAAGAGGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_011 ATGCCACCCTCTCCTCCTAAATCTCCTTTTATTAGCTCTTCACTCAAAGGAGCTCATGAAGATCGCAAATTTAAATGCTATAGGGGTGTCCGAAAGAGGT
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT4G31 CTTGGGGCAAATGGGTGTCTGAAATCAGAGTTCCAAAGACTGGACGACGAATATGGCTAGGTTCATACGATGCTCCAGAGAAGGCAGCTAGAGCCTATGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_011 CTTGGGGCAAATGGGTGTCTGAAATCAGAGTTCCAAAGACTGGACGACGAATATGGCTAGGTTCATACGATGCTCCAGAGAAGGCAGCTAGAGCCTATGA
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT4G31 TGCTGCTTTGTTCTGTATTAGGGGTGAGAAGGGAGTTTACAATTTTCCCACTGATAAAAAGCCGCAGCTTCCAGAAGGTTCTGTCCGGCCTCTGTCCAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_011 TGCTGCTTTGTTCTGTATTAGGGGTGAGAAGGGAGTTTACAATTTTCCCACTGATAAAAAGCCGCAGCTTCCAGAAGGTTCTGTCCGGCCTCTGTCCAAG
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT4G31 CTCGACATACAGACAATAGCAACAAACTATGCTTCATCAGTTGTGCATGTACCTTCCCATGCCACCACACTCCCGGCAACAACCCAGGTTCCCTCTGAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_011 CTCGACATACAGACAATAGCAACAAACTATGCTTCATCAGTTGTGCATGTACCTTCCCATGCCACCACACTCCCGGCAACAACCCAGGTTCCCTCTGAAG
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT4G31 TTCCTGCTTCCTCTGATGTTTCTGCTTCTACTGAGATTACAGAGATGGTCGATGAATATTATCTCCCAACCGATGCAACTGCAGAATCAATATTCTCAGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_011 TTCCTGCTTCCTCTGATGTTTCTGCTTCTACTGAGATTACAGAGATGGTCGATGAATATTATCTCCCAACCGATGCAACTGCAGAATCAATATTCTCAGT
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560
AT4G31 TGAAGACTTACAACTGGACAGTTTCCTCATGATGGACATTGATTGGATAAACAATCTAATC
::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_011 TGAAGACTTACAACTGGACAGTTTCCTCATGATGGACATTGATTGGATAAAC---------
510 520 530 540 550
10 20 30 40 50 60 70 80 90 100
AT4G31 MPPSPPKSPFISSSLKGAHEDRKFKCYRGVRKRSWGKWVSEIRVPKTGRRIWLGSYDAPEKAARAYDAALFCIRGEKGVYNFPTDKKPQLPEGSVRPLSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_011 MPPSPPKSPFISSSLKGAHEDRKFKCYRGVRKRSWGKWVSEIRVPKTGRRIWLGSYDAPEKAARAYDAALFCIRGEKGVYNFPTDKKPQLPEGSVRPLSK
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180
AT4G31 LDIQTIATNYASSVVHVPSHATTLPATTQVPSEVPASSDVSASTEITEMVDEYYLPTDATAESIFSVEDLQLDSFLMMDIDWINNLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_011 LDIQTIATNYASSVVHVPSHATTLPATTQVPSEVPASSDVSASTEITEMVDEYYLPTDATAESIFSVEDLQLDSFLMMDIDWIN---
110 120 130 140 150 160 170 180
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