◆◆◆RE_0115 detail◆◆◆

Code name	RE_0115
Locus	AT4G37750
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.60%一致
comment	0311_アミノ酸配列70%以上一致
sequence	>RE_0115_1665bp ATGAAGTCTTTTTGTGTTAATGATGATAATAATCATAGCAACACGACTAATTTGTTAGGGTTCTCATTGTCTTCAAATATGATGAAAATGGGAGGTAGAG GAGGTAGAGAAGCTATTTACTCATCTTCAACTTCTTCAGCTGCTTCTTCTTCTTCTTCTGTTCCACCTCAACTTGTTGTTGGTGACAACACTAGCAACTT TGGTGTTTGCTATGGATCTAACCCAAATGGAGGAATCTATTCTCACATGTCTGTGATGCCACTCAGATCTGATGGTTCTCTTTGCTTAATGGAAGCTCTC AACAGATCTTCTCACTCGAATCACCATCAAGATTCATCTCCAAAGGTGGAGGATTTCTTTGGGACCCATCACAACAACACAAGTCACAAAGAAGCCATGG ATCTTAGCTTAGATAGTTTATTCTACAACACCACTCATGAGCCCAACACGACTACAAACTTTCAAGAGTTCTTTAGCTTCCCTCAAACCAGAAACCATGA GGAAGAAACTAGAAATTACGGGAATGACCCTAGTTTGACACATGGAGGGTCTTTTAATGTAGGGGTATATGGGGAATTTCAACAGTCACTGAGCTTATCC ATGAGCCCTGGGTCACAATCTAGCTGCATCACTGGCTCTCACCACCACCAACAAAACCAAAACCAAAACCACCAAAGCCAAAACCACCAGCAGATCTCTG AAGCTCTTGTGGAGACAAGCGTTGGGTTTGAGACGACGACAATGGCGGCTGCGAAGAAGAAGAGGGGACAAGAGGATGTTGTAGTTGTTGGTCAGAAACA GATTGTTCATAGAAAATCTATCGATACTTTTGGACAACGAACTTCTCAATACCGAGGCGTTACAAGACATAGATGGACTGGTAGATATGAAGCTCATCTA TGGGACAATAGTTTCAAGAAGGAAGGTCACAGTAGAAAAGGAAGACAAGTTTATCTGGGAGGTTATGATATGGAGGAGAAAGCTGCTCGAGCATATGATC TTGCTGCACTCAAGTACTGGGGTCCCTCTACTCACACCAATTTCTCTGCGGAGAATTATCAGAAAGAGATTGAAGACATGAAGAACATGACTAGACAAGA ATATGTTGCACATTTGAGAAGGAAGAGCAGTGGTTTCTCTAGGGGTGCTTCCATCTATAGAGGAGTCACAAGACATCACCAGCATGGAAGGTGGCAAGCA CGGATTGGTAGAGTCGCTGGAAACAAAGATCTCTACCTTGGAACTTTTGGAACCCAAGAAGAAGCTGCAGAAGCTTACGATGTAGCAGCAATTAAGTTCC GTGGCACAAATGCTGTGACTAACTTTGATATCACGAGGTACGATGTTGATCGTATCATGTCTAGTAACACACTCTTGTCTGGAGAGTTAGCGCGAAGGAA CAACAACAGCATTGTCGTCAGGAATACTGAAGACCAAACCGCTCTAAATGCTGTTGTGGAAGGTGGTTCCAACAAAGAAGTCAGTACTCCCGAGAGACTC TTGAGTTTTCCGGCGATTTTCGCGTTGCCTCAAGTTAATCAAAAGATGTTCGGATCAAATATGGGCGGAAATATGAGTCCTTGGACATCAAACCCTAATG CTGAGCTTAAGACCGTCGCTCTTACTTTGCCTCAGATGCCGGTTTTCGCTGCTTGGGCTGATTCT >RE_0115_translated MKSFCVNDDNNHSNTTNLLGFSLSSNMMKMGGRGGREAIYSSSTSSAASSSSSVPPQLVVGDNTSNFGVCYGSNPNGGIYSHMSVMPLRSDGSLCLMEAL NRSSHSNHHQDSSPKVEDFFGTHHNNTSHKEAMDLSLDSLFYNTTHEPNTTTNFQEFFSFPQTRNHEEETRNYGNDPSLTHGGSFNVGVYGEFQQSLSLS MSPGSQSSCITGSHHHQQNQNQNHQSQNHQQISEALVETSVGFETTTMAAAKKKRGQEDVVVVGQKQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHL WDNSFKKEGHSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHTNFSAENYQKEIEDMKNMTRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQA RIGRVAGNKDLYLGTFGTQEEAAEAYDVAAIKFRGTNAVTNFDITRYDVDRIMSSNTLLSGELARRNNNSIVVRNTEDQTALNAVVEGGSNKEVSTPERL LSFPAIFALPQVNQKMFGSNMGGNMSPWTSNPNAELKTVALTLPQMPVFAAWADS
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1662/1665 (99.8%)（アミノ酸配列で553/555 (99.6%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT4G37 ATGAAGTCTTTTTGTGATAATGATGATAATAATCATAGCAACACGACTAATTTGTTAGGGTTCTCATTGTCTTCAAATATGATGAAAATGGGAGGTAGAG :::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_011 ATGAAGTCTTTTTGTGTTAATGATGATAATAATCATAGCAACACGACTAATTTGTTAGGGTTCTCATTGTCTTCAAATATGATGAAAATGGGAGGTAGAG 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT4G37 GAGGTAGAGAAGCTATTTACTCATCTTCAACTTCTTCAGCTGCAACTTCTTCTTCTTCTGTTCCACCTCAACTTGTTGTTGGTGACAACACTAGCAACTT ::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_011 GAGGTAGAGAAGCTATTTACTCATCTTCAACTTCTTCAGCTGCTTCTTCTTCTTCTTCTGTTCCACCTCAACTTGTTGTTGGTGACAACACTAGCAACTT 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT4G37 TGGTGTTTGCTATGGATCTAACCCAAATGGAGGAATCTATTCTCACATGTCTGTGATGCCACTCAGATCTGATGGTTCTCTTTGCTTAATGGAAGCTCTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_011 TGGTGTTTGCTATGGATCTAACCCAAATGGAGGAATCTATTCTCACATGTCTGTGATGCCACTCAGATCTGATGGTTCTCTTTGCTTAATGGAAGCTCTC 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT4G37 AACAGATCTTCTCACTCGAATCACCATCAAGATTCATCTCCAAAGGTGGAGGATTTCTTTGGGACCCATCACAACAACACAAGTCACAAAGAAGCCATGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_011 AACAGATCTTCTCACTCGAATCACCATCAAGATTCATCTCCAAAGGTGGAGGATTTCTTTGGGACCCATCACAACAACACAAGTCACAAAGAAGCCATGG 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT4G37 ATCTTAGCTTAGATAGTTTATTCTACAACACCACTCATGAGCCCAACACGACTACAAACTTTCAAGAGTTCTTTAGCTTCCCTCAAACCAGAAACCATGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_011 ATCTTAGCTTAGATAGTTTATTCTACAACACCACTCATGAGCCCAACACGACTACAAACTTTCAAGAGTTCTTTAGCTTCCCTCAAACCAGAAACCATGA 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT4G37 GGAAGAAACTAGAAATTACGGGAATGACCCTAGTTTGACACATGGAGGGTCTTTTAATGTAGGGGTATATGGGGAATTTCAACAGTCACTGAGCTTATCC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_011 GGAAGAAACTAGAAATTACGGGAATGACCCTAGTTTGACACATGGAGGGTCTTTTAATGTAGGGGTATATGGGGAATTTCAACAGTCACTGAGCTTATCC 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT4G37 ATGAGCCCTGGGTCACAATCTAGCTGCATCACTGGCTCTCACCACCACCAACAAAACCAAAACCAAAACCACCAAAGCCAAAACCACCAGCAGATCTCTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_011 ATGAGCCCTGGGTCACAATCTAGCTGCATCACTGGCTCTCACCACCACCAACAAAACCAAAACCAAAACCACCAAAGCCAAAACCACCAGCAGATCTCTG 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT4G37 AAGCTCTTGTGGAGACAAGCGTTGGGTTTGAGACGACGACAATGGCGGCTGCGAAGAAGAAGAGGGGACAAGAGGATGTTGTAGTTGTTGGTCAGAAACA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_011 AAGCTCTTGTGGAGACAAGCGTTGGGTTTGAGACGACGACAATGGCGGCTGCGAAGAAGAAGAGGGGACAAGAGGATGTTGTAGTTGTTGGTCAGAAACA 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT4G37 GATTGTTCATAGAAAATCTATCGATACTTTTGGACAACGAACTTCTCAATACCGAGGCGTTACAAGACATAGATGGACTGGTAGATATGAAGCTCATCTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_011 GATTGTTCATAGAAAATCTATCGATACTTTTGGACAACGAACTTCTCAATACCGAGGCGTTACAAGACATAGATGGACTGGTAGATATGAAGCTCATCTA 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT4G37 TGGGACAATAGTTTCAAGAAGGAAGGTCACAGTAGAAAAGGAAGACAAGTTTATCTGGGAGGTTATGATATGGAGGAGAAAGCTGCTCGAGCATATGATC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_011 TGGGACAATAGTTTCAAGAAGGAAGGTCACAGTAGAAAAGGAAGACAAGTTTATCTGGGAGGTTATGATATGGAGGAGAAAGCTGCTCGAGCATATGATC 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT4G37 TTGCTGCACTCAAGTACTGGGGTCCCTCTACTCACACCAATTTCTCTGCGGAGAATTATCAGAAAGAGATTGAAGACATGAAGAACATGACTAGACAAGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_011 TTGCTGCACTCAAGTACTGGGGTCCCTCTACTCACACCAATTTCTCTGCGGAGAATTATCAGAAAGAGATTGAAGACATGAAGAACATGACTAGACAAGA 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT4G37 ATATGTTGCACATTTGAGAAGGAAGAGCAGTGGTTTCTCTAGGGGTGCTTCCATCTATAGAGGAGTCACAAGACATCACCAGCATGGAAGGTGGCAAGCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_011 ATATGTTGCACATTTGAGAAGGAAGAGCAGTGGTTTCTCTAGGGGTGCTTCCATCTATAGAGGAGTCACAAGACATCACCAGCATGGAAGGTGGCAAGCA 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 AT4G37 CGGATTGGTAGAGTCGCTGGAAACAAAGATCTCTACCTTGGAACTTTTGGAACCCAAGAAGAAGCTGCAGAAGCTTACGATGTAGCAGCAATTAAGTTCC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_011 CGGATTGGTAGAGTCGCTGGAAACAAAGATCTCTACCTTGGAACTTTTGGAACCCAAGAAGAAGCTGCAGAAGCTTACGATGTAGCAGCAATTAAGTTCC 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 AT4G37 GTGGCACAAATGCTGTGACTAACTTTGATATCACGAGGTACGATGTTGATCGTATCATGTCTAGTAACACACTCTTGTCTGGAGAGTTAGCGCGAAGGAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_011 GTGGCACAAATGCTGTGACTAACTTTGATATCACGAGGTACGATGTTGATCGTATCATGTCTAGTAACACACTCTTGTCTGGAGAGTTAGCGCGAAGGAA 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 AT4G37 CAACAACAGCATTGTCGTCAGGAATACTGAAGACCAAACCGCTCTAAATGCTGTTGTGGAAGGTGGTTCCAACAAAGAAGTCAGTACTCCCGAGAGACTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_011 CAACAACAGCATTGTCGTCAGGAATACTGAAGACCAAACCGCTCTAAATGCTGTTGTGGAAGGTGGTTCCAACAAAGAAGTCAGTACTCCCGAGAGACTC 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 AT4G37 TTGAGTTTTCCGGCGATTTTCGCGTTGCCTCAAGTTAATCAAAAGATGTTCGGATCAAATATGGGCGGAAATATGAGTCCTTGGACATCAAACCCTAATG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_011 TTGAGTTTTCCGGCGATTTTCGCGTTGCCTCAAGTTAATCAAAAGATGTTCGGATCAAATATGGGCGGAAATATGAGTCCTTGGACATCAAACCCTAATG 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 1610 1620 1630 1640 1650 1660 AT4G37 CTGAGCTTAAGACCGTCGCTCTTACTTTGCCTCAGATGCCGGTTTTCGCTGCTTGGGCTGATTCT ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_011 CTGAGCTTAAGACCGTCGCTCTTACTTTGCCTCAGATGCCGGTTTTCGCTGCTTGGGCTGATTCT 1610 1620 1630 1640 1650 1660 10 20 30 40 50 60 70 80 90 100 AT4G37 MKSFCDNDDNNHSNTTNLLGFSLSSNMMKMGGRGGREAIYSSSTSSAATSSSSVPPQLVVGDNTSNFGVCYGSNPNGGIYSHMSVMPLRSDGSLCLMEAL ::::: ::::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::: RE_011 MKSFCVNDDNNHSNTTNLLGFSLSSNMMKMGGRGGREAIYSSSTSSAASSSSSVPPQLVVGDNTSNFGVCYGSNPNGGIYSHMSVMPLRSDGSLCLMEAL 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT4G37 NRSSHSNHHQDSSPKVEDFFGTHHNNTSHKEAMDLSLDSLFYNTTHEPNTTTNFQEFFSFPQTRNHEEETRNYGNDPSLTHGGSFNVGVYGEFQQSLSLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_011 NRSSHSNHHQDSSPKVEDFFGTHHNNTSHKEAMDLSLDSLFYNTTHEPNTTTNFQEFFSFPQTRNHEEETRNYGNDPSLTHGGSFNVGVYGEFQQSLSLS 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT4G37 MSPGSQSSCITGSHHHQQNQNQNHQSQNHQQISEALVETSVGFETTTMAAAKKKRGQEDVVVVGQKQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_011 MSPGSQSSCITGSHHHQQNQNQNHQSQNHQQISEALVETSVGFETTTMAAAKKKRGQEDVVVVGQKQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHL 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT4G37 WDNSFKKEGHSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHTNFSAENYQKEIEDMKNMTRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_011 WDNSFKKEGHSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHTNFSAENYQKEIEDMKNMTRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQA 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT4G37 RIGRVAGNKDLYLGTFGTQEEAAEAYDVAAIKFRGTNAVTNFDITRYDVDRIMSSNTLLSGELARRNNNSIVVRNTEDQTALNAVVEGGSNKEVSTPERL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_011 RIGRVAGNKDLYLGTFGTQEEAAEAYDVAAIKFRGTNAVTNFDITRYDVDRIMSSNTLLSGELARRNNNSIVVRNTEDQTALNAVVEGGSNKEVSTPERL 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 AT4G37 LSFPAIFALPQVNQKMFGSNMGGNMSPWTSNPNAELKTVALTLPQMPVFAAWADS ::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_011 LSFPAIFALPQVNQKMFGSNMGGNMSPWTSNPNAELKTVALTLPQMPVFAAWADS 510 520 530 540 550

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