| Code name | RE_0119 | |||
|---|---|---|---|---|
| Locus | AT5G07580 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列75.50%一致 | |||
| comment | 0314_アミノ酸配列70%以上一致 | |||
| sequence |
>RE_0119_621bp ATGGCGAGTTTTGAGGAAAGCTCTGATTTGGAAGCTATACAGAGCCATCTCTTAGAAGACTTGTTGGTTTGTGATGGTTTCATGGGAGATTTTGACTTCG ATGCTTCTTTTGTCTCAGGACTTTGGTGTATAGAACCACACGTTCCTAAACAAGAACCTGATTCTCCAGTTCTTGATCCGGATTCTTTCGTCAACGAGTT CTTGCAAGTGGAAGGGGAATCATCATCATCATCATCACCAGAGCTGAATTCATCGTCATCAACATATGAGACTGATCAGAGTGTGAAAAAGGCAGAGAGG TTCGAAGAAGAAGTAGATGCTAGACATTACCGAGGAGTGAGGCGAAGGCCGTGGGGGAAATTTGCAGCAGAGATTCGAGATCCAGCAAAGAAAGGATCAA GAATCTGGCTAGGAACATTTGAGAGTGATGTTGATGCTGCAAGAGCCTATGACTGTGCAGCTTTCAAGCTCCGGGGAAGAAAAGCCGTGCTCAACTTCCC TCTTGACGCCGGGAAATATGAAGCTCCAGCGAATTCAGGAAGGAAAAGGAAGAGAAGTGATGTGCATGAAGAGCTTCAAAGAACTCAGAGCAATTCATCT TCATCTTCCTGTGATGCATTT >RE_0119_translated MASFEESSDLEAIQSHLLEDLLVCDGFMGDFDFDASFVSGLWCIEPHVPKQEPDSPVLDPDSFVNEFLQVEGESSSSSSPELNSSSSTYETDQSVKKAER FEEEVDARHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDVDAARAYDCAAFKLRGRKAVLNFPLDAGKYEAPANSGRKRKRSDVHEELQRTQSNSS SSSCDAF |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 621/822 (75.5%)（アミノ酸配列で207/274 (75.5%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT5G07 ATGACCCCATCTCTAAAACCACTAAGAGAGCGACAAAACCATAGCTTTTTTTTTGTGTCCCTACCCCATCCATGGCTGCTAAAATCTTGTGATTACCTTC
RE_011 ----------------------------------------------------------------------------------------------------
110 120 130 140 150 160 170 180 190 200
AT5G07 TTGTCTCCTTCCTCTTCTCTTTCCCTCTTTTATATAAGAACCAAAACATCCACAGCTTTTGTTCCATCATCACTTGCAGATTCTTTCTCTCTTTCGTAAA
RE_011 ----------------------------------------------------------------------------------------------------
210 220 230 240 250 260 270 280 290 300
AT5G07 AATGGCGAGTTTTGAGGAAAGCTCTGATTTGGAAGCTATACAGAGCCATCTCTTAGAAGACTTGTTGGTTTGTGATGGTTTCATGGGAGATTTTGACTTC
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_011 -ATGGCGAGTTTTGAGGAAAGCTCTGATTTGGAAGCTATACAGAGCCATCTCTTAGAAGACTTGTTGGTTTGTGATGGTTTCATGGGAGATTTTGACTTC
10 20 30 40 50 60 70 80 90
310 320 330 340 350 360 370 380 390 400
AT5G07 GATGCTTCTTTTGTCTCAGGACTTTGGTGTATAGAACCACACGTTCCTAAACAAGAACCTGATTCTCCAGTTCTTGATCCGGATTCTTTCGTCAACGAGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_011 GATGCTTCTTTTGTCTCAGGACTTTGGTGTATAGAACCACACGTTCCTAAACAAGAACCTGATTCTCCAGTTCTTGATCCGGATTCTTTCGTCAACGAGT
100 110 120 130 140 150 160 170 180 190
410 420 430 440 450 460 470 480 490 500
AT5G07 TCTTGCAAGTGGAAGGGGAATCATCATCATCATCATCACCAGAGCTGAATTCATCGTCATCAACATATGAGACTGATCAGAGTGTGAAAAAGGCAGAGAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_011 TCTTGCAAGTGGAAGGGGAATCATCATCATCATCATCACCAGAGCTGAATTCATCGTCATCAACATATGAGACTGATCAGAGTGTGAAAAAGGCAGAGAG
200 210 220 230 240 250 260 270 280 290
510 520 530 540 550 560 570 580 590 600
AT5G07 GTTCGAAGAAGAAGTAGATGCTAGACATTACCGAGGAGTGAGGCGAAGGCCGTGGGGGAAATTTGCAGCAGAGATTCGAGATCCAGCAAAGAAAGGATCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_011 GTTCGAAGAAGAAGTAGATGCTAGACATTACCGAGGAGTGAGGCGAAGGCCGTGGGGGAAATTTGCAGCAGAGATTCGAGATCCAGCAAAGAAAGGATCA
300 310 320 330 340 350 360 370 380 390
610 620 630 640 650 660 670 680 690 700
AT5G07 AGAATCTGGCTAGGAACATTTGAGAGTGATGTTGATGCTGCAAGAGCCTATGACTGTGCAGCTTTCAAGCTCCGGGGAAGAAAAGCCGTGCTCAACTTCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_011 AGAATCTGGCTAGGAACATTTGAGAGTGATGTTGATGCTGCAAGAGCCTATGACTGTGCAGCTTTCAAGCTCCGGGGAAGAAAAGCCGTGCTCAACTTCC
400 410 420 430 440 450 460 470 480 490
710 720 730 740 750 760 770 780 790 800
AT5G07 CTCTTGACGCCGGGAAATATGAAGCTCCAGCGAATTCAGGAAGGAAAAGGAAGAGAAGTGATGTGCATGAAGAGCTTCAAAGAACTCAGAGCAATTCATC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_011 CTCTTGACGCCGGGAAATATGAAGCTCCAGCGAATTCAGGAAGGAAAAGGAAGAGAAGTGATGTGCATGAAGAGCTTCAAAGAACTCAGAGCAATTCATC
500 510 520 530 540 550 560 570 580 590
810 820
AT5G07 TTCATCTTCCTGTGATGCATTT
::::::::::::::::::::::
RE_011 TTCATCTTCCTGTGATGCATTT
600 610 620
10 20 30 40 50 60 70 80 90 100
AT5G07 MTPSLKPLRERQNHSFFFVSLPHPWLLKSCDYLLVSFLFSFPLLYKNQNIHSFCSIITCRFFLSFVKMASFEESSDLEAIQSHLLEDLLVCDGFMGDFDF
:::::::::::::::::::::::::::::::::
RE_011 -------------------------------------------------------------------MASFEESSDLEAIQSHLLEDLLVCDGFMGDFDF
10 20 30
110 120 130 140 150 160 170 180 190 200
AT5G07 DASFVSGLWCIEPHVPKQEPDSPVLDPDSFVNEFLQVEGESSSSSSPELNSSSSTYETDQSVKKAERFEEEVDARHYRGVRRRPWGKFAAEIRDPAKKGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_011 DASFVSGLWCIEPHVPKQEPDSPVLDPDSFVNEFLQVEGESSSSSSPELNSSSSTYETDQSVKKAERFEEEVDARHYRGVRRRPWGKFAAEIRDPAKKGS
40 50 60 70 80 90 100 110 120 130
210 220 230 240 250 260 270
AT5G07 RIWLGTFESDVDAARAYDCAAFKLRGRKAVLNFPLDAGKYEAPANSGRKRKRSDVHEELQRTQSNSSSSSCDAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_011 RIWLGTFESDVDAARAYDCAAFKLRGRKAVLNFPLDAGKYEAPANSGRKRKRSDVHEELQRTQSNSSSSSCDAF
140 150 160 170 180 190 200
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