◆◆◆RE_0120 detail◆◆◆

Code name	RE_0120
Locus	AT5G10510
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.80%一致
comment	0428_アミノ酸配列70%以上一致
sequence	>RE_0120_1707bp ATGGAGATGTTGAGGTCATCTGATCAGTCTCAGTTTGTCTCCTATGACGCTTCTTCCGCCGCTTCCTCCTCTCCTTATCTCCTCGATAATTTCTATGGTT GGTCAAACCAAAAACCTCAGGAGTTTTTCAAAGAAGAAGCTCAGTTAGCAGCAGCAGCTTCAATGGCGGATTCAACAATCTTAACAACATTCGTAGACCC ACAATCTCATCATTCTCAGAATCACATCCCAAAGCTCGAAGATTTTCTCGGTGACTCTTCTTCTATCGTTCGTTACTCCGACAACAGTCAAACCGACACA CAAGACTCTTCCCTCACTCAAATCTACGATCCACGTCACCACCATAACCAAACCGGCTTTTACTCCGATCACCACGATTTCAAAACCATGGCCGGTTTTC AATCCGCTTTCTCTACTAACTCCGGTTCAGAGGTCGATGACTCTGCTTCTATCGGAAGGACTCATCTTGCTGGAGACTATTTGGGACACGTGGTTGAATC TTCTGGTCCGGAGCTAGGGTTTCACGGTGGATCTACCGGAGCTTTGTCACTTGGTGTTAACGTCAATAACAATACTAATCACCGGAATGATAATGATAAT CATTACCGAGGCAATAACAATGGTGAGAGAATCAACAACAACAACAACAATGACAACGAGAAGACAGATTCTGAGAAGGAGAAGGCTGTTGTGGCTGTGG AAACATCAGATTGTTCTAATAAGAAGATTGCTGATACGTTTGGTCAAAGGACTTCGATTTACAGAGGTGTTACTCGACATAGATGGACGGGAAGATATGA AGCACATCTATGGGATAATAGCTGTAGGAGAGAAGGTCAGGCCAGGAAGGGACGTCAAGTATACTTGGGTGGATATGACAAAGAAGATAAGGCAGCTCGA GCTTACGATTTAGCAGCTCTGAAATACTGGAATGCTACTGCTACCACCAATTTCCCTATTACGAATTACTCGAAAGAAGTGGAGGAAATGAAGCACATGA CCAAGCAAGAGTTCATTGCCTCCCTCAGGAGGAAGAGTAGCGGTTTCTCTAGAGGAGCTTCGATATACCGAGGTGTTACAAGGCATCATCAACAAGGACG TTGGCAAGCAAGGATTGGCCGAGTTGCTGGGAACAAAGATCTTTACCTTGGAACCTTTGCAACGGAAGAGGAAGCAGCTGAAGCGTATGACATAGCAGCA ATCAAATTCAGAGGAATAAACGCTGTAACTAACTTTGAGATGAACCGTTACGACGTTGAAGCCATCATGAAGAGTGCACTTCCCATCGGTGGTGCAGCTA AACGTCTTAAGCTCTCTTTGGAAGCTGCTGCTTCATCAGAGCAGAAACCAATCCTCGGTCATCATCAACTTCACCATTTCCAGCAACAACAACAACAACA ACAGCTTCAGCTTCAGTCATCTCCTAATCACAGTAGCATTAACTTCGCTCTCTGTCCTAATTCAGCAGTTCAGTCTCAACAGATCATTCCTTGTGGAATC CCTTTTGAAGCAGCTGCTCTTTACCACCACCACCAACAACAACAGCAACACCAACAGCAGCAGCAGCAACAGAACTTCTTCCAGCATTTTCCGGCGAATG CAGCTTCTGACTCGACCGGGTCTAACAACAACTCCAACGTTCAGGGAACAATGGGACTTATGGCACCAAATCCGGCTGAGTTCCTCCTCTGGCCTAATCA GTCTTAC >RE_0120_translated MEMLRSSDQSQFVSYDASSAASSSPYLLDNFYGWSNQKPQEFFKEEAQLAAAASMADSTILTTFVDPQSHHSQNHIPKLEDFLGDSSSIVRYSDNSQTDT QDSSLTQIYDPRHHHNQTGFYSDHHDFKTMAGFQSAFSTNSGSEVDDSASIGRTHLAGDYLGHVVESSGPELGFHGGSTGALSLGVNVNNNTNHRNDNDN HYRGNNNGERINNNNNNDNEKTDSEKEKAVVAVETSDCSNKKIADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEDKAAR AYDLAALKYWNATATTNFPITNYSKEVEEMKHMTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAA IKFRGINAVTNFEMNRYDVEAIMKSALPIGGAAKRLKLSLEAAASSEQKPILGHHQLHHFQQQQQQQQLQLQSSPNHSSINFALCPNSAVQSQQIIPCGI PFEAAALYHHHQQQQQHQQQQQQQNFFQHFPANAASDSTGSNNNSNVQGTMGLMAPNPAEFLLWPNQSY
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1706/1707 (99.9%)（アミノ酸配列で568/569 (99.8%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT5G10 ATGGAGATGTTGAGGTCATCTGATCAGTCTCAGTTTGTCTCCTATGACGCTTCTTCCGCCGCTTCCTCCTCTCCTTATCTCCTCGATAATTTCTATGGTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_012 ATGGAGATGTTGAGGTCATCTGATCAGTCTCAGTTTGTCTCCTATGACGCTTCTTCCGCCGCTTCCTCCTCTCCTTATCTCCTCGATAATTTCTATGGTT 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT5G10 GGTCAAACCAAAAACCTCAGGAGTTTTTCAAAGAAGAAGCTCAGTTAGCAGCAGCAGCTTCAATGGCGGATTCAACAATCTTAACAACATTCGTAGACCC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_012 GGTCAAACCAAAAACCTCAGGAGTTTTTCAAAGAAGAAGCTCAGTTAGCAGCAGCAGCTTCAATGGCGGATTCAACAATCTTAACAACATTCGTAGACCC 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT5G10 ACAATCTCATCATTCTCAGAATCACATCCCAAAGCTCGAAGATTTTCTCGGTGACTCTTCTTCTATCGTTCGTTACTCCGACAACAGTCAAACCGACACA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_012 ACAATCTCATCATTCTCAGAATCACATCCCAAAGCTCGAAGATTTTCTCGGTGACTCTTCTTCTATCGTTCGTTACTCCGACAACAGTCAAACCGACACA 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT5G10 CAAGACTCTTCCCTCACTCAAATCTACGATCCACGTCACCACCATAACCAAACCGGCTTTTACTCCGATCACCACGATTTCAAAACCATGGCCGGTTTTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_012 CAAGACTCTTCCCTCACTCAAATCTACGATCCACGTCACCACCATAACCAAACCGGCTTTTACTCCGATCACCACGATTTCAAAACCATGGCCGGTTTTC 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT5G10 AATCCGCTTTCTCTACTAACTCCGGTTCAGAGGTCGATGACTCTGCTTCTATCGGAAGGACTCATCTTGCTGGAGACTATTTGGGACACGTGGTTGAATC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_012 AATCCGCTTTCTCTACTAACTCCGGTTCAGAGGTCGATGACTCTGCTTCTATCGGAAGGACTCATCTTGCTGGAGACTATTTGGGACACGTGGTTGAATC 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT5G10 TTCTGGTCCGGAGCTAGGGTTTCACGGTGGATCTACCGGAGCTTTGTCACTTGGTGTTAACGTCAATAACAATACTAATCACCGGAATGATAATGATAAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_012 TTCTGGTCCGGAGCTAGGGTTTCACGGTGGATCTACCGGAGCTTTGTCACTTGGTGTTAACGTCAATAACAATACTAATCACCGGAATGATAATGATAAT 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT5G10 CATTACCGAGGCAATAACAATGGTGAGAGAATCAACAACAACAACAACAATGACAACGAGAAGACAGATTCTGAGAAGGAGAAGGCTGTTGTGGCTGTGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_012 CATTACCGAGGCAATAACAATGGTGAGAGAATCAACAACAACAACAACAATGACAACGAGAAGACAGATTCTGAGAAGGAGAAGGCTGTTGTGGCTGTGG 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT5G10 AAACATCAGATTGTTCTAATAAGAAGATTGCTGATACGTTTGGTCAAAGGACTTCGATTTACAGAGGTGTTACTCGACATAGATGGACGGGAAGATATGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_012 AAACATCAGATTGTTCTAATAAGAAGATTGCTGATACGTTTGGTCAAAGGACTTCGATTTACAGAGGTGTTACTCGACATAGATGGACGGGAAGATATGA 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT5G10 AGCACATCTATGGGATAATAGCTGTAGGAGAGAAGGTCAGGCCAGGAAGGGACGTCAAGTATACTTGGGTGGATATGACAAAGAAGATAAGGCAGCTCGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_012 AGCACATCTATGGGATAATAGCTGTAGGAGAGAAGGTCAGGCCAGGAAGGGACGTCAAGTATACTTGGGTGGATATGACAAAGAAGATAAGGCAGCTCGA 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT5G10 GCTTACGATTTAGCAGCTCTGAAATACTGGAATGCTACTGCTACCACCAATTTCCCTATTACGAATTACTCGAAAGAAGTGGAGGAAATGAAGCACATGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_012 GCTTACGATTTAGCAGCTCTGAAATACTGGAATGCTACTGCTACCACCAATTTCCCTATTACGAATTACTCGAAAGAAGTGGAGGAAATGAAGCACATGA 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT5G10 CCAAGCAAGAGTTCATTGCCTCCCTCAGGAGGAAGAGTAGCGGTTTCTCTAGAGGAGCTTCGATATACCGAGGTGTTACAAGGCATCATCAACAAGGACG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_012 CCAAGCAAGAGTTCATTGCCTCCCTCAGGAGGAAGAGTAGCGGTTTCTCTAGAGGAGCTTCGATATACCGAGGTGTTACAAGGCATCATCAACAAGGACG 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT5G10 TTGGCAAGCAAGGATTGGCCGAGTTGCTGGGAACAAAGATCTTTACCTTGGAACCTTTGCAACGGAAGAGGAAGCAGCTGAAGCGTATGACATAGCAGCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_012 TTGGCAAGCAAGGATTGGCCGAGTTGCTGGGAACAAAGATCTTTACCTTGGAACCTTTGCAACGGAAGAGGAAGCAGCTGAAGCGTATGACATAGCAGCA 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 AT5G10 ATCAAATTCAGAGGAATAAACGCTGTAACTAACTTTGAGATGAACCGTTACGACGTTGAAGCCATCATGAAGAGTGCACTTCCCATCGGTGGTGCAGCTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_012 ATCAAATTCAGAGGAATAAACGCTGTAACTAACTTTGAGATGAACCGTTACGACGTTGAAGCCATCATGAAGAGTGCACTTCCCATCGGTGGTGCAGCTA 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 AT5G10 AACGTCTTAAGCTCTCTTTGGAAGCTGCTGCTTCATCAGAGCAGAAACCAATCCTCGGTCATCATCAACTTCACCATTTCCAGCAACAACAACAACAACA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_012 AACGTCTTAAGCTCTCTTTGGAAGCTGCTGCTTCATCAGAGCAGAAACCAATCCTCGGTCATCATCAACTTCACCATTTCCAGCAACAACAACAACAACA 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 AT5G10 ACAGCTTCAGCTTCAGTCATCTCCTAATCACAGTAGCATTAACTTCGCTCTCTGTCCTAATTCAGCAGTTCAGTCTCAACAGATCATTCCTTGTGGAATC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_012 ACAGCTTCAGCTTCAGTCATCTCCTAATCACAGTAGCATTAACTTCGCTCTCTGTCCTAATTCAGCAGTTCAGTCTCAACAGATCATTCCTTGTGGAATC 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 AT5G10 CCTTTTGAAGCAGCTGCTCTTTACCACCACCACCAACAACAACAGCAACACCAACAGCAGCAGCAGCAACAGAACTTCTTCCAGCATTTTCCGGCGAATG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_012 CCTTTTGAAGCAGCTGCTCTTTACCACCACCACCAACAACAACAGCAACACCAACAGCAGCAGCAGCAACAGAACTTCTTCCAGCATTTTCCGGCGAATG 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 1610 1620 1630 1640 1650 1660 1670 1680 1690 1700 AT5G10 CAGCTTCTGACTCGACCGGGTCTAACAACAACTCCAACGTTCAGGGAACAATGGGACTTATGGCACCAAATCCGGCTGAGTTCTTCCTCTGGCCTAATCA ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::: RE_012 CAGCTTCTGACTCGACCGGGTCTAACAACAACTCCAACGTTCAGGGAACAATGGGACTTATGGCACCAAATCCGGCTGAGTTCCTCCTCTGGCCTAATCA 1610 1620 1630 1640 1650 1660 1670 1680 1690 1700 AT5G10 GTCTTAC ::::::: RE_012 GTCTTAC 10 20 30 40 50 60 70 80 90 100 AT5G10 MEMLRSSDQSQFVSYDASSAASSSPYLLDNFYGWSNQKPQEFFKEEAQLAAAASMADSTILTTFVDPQSHHSQNHIPKLEDFLGDSSSIVRYSDNSQTDT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_012 MEMLRSSDQSQFVSYDASSAASSSPYLLDNFYGWSNQKPQEFFKEEAQLAAAASMADSTILTTFVDPQSHHSQNHIPKLEDFLGDSSSIVRYSDNSQTDT 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT5G10 QDSSLTQIYDPRHHHNQTGFYSDHHDFKTMAGFQSAFSTNSGSEVDDSASIGRTHLAGDYLGHVVESSGPELGFHGGSTGALSLGVNVNNNTNHRNDNDN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_012 QDSSLTQIYDPRHHHNQTGFYSDHHDFKTMAGFQSAFSTNSGSEVDDSASIGRTHLAGDYLGHVVESSGPELGFHGGSTGALSLGVNVNNNTNHRNDNDN 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT5G10 HYRGNNNGERINNNNNNDNEKTDSEKEKAVVAVETSDCSNKKIADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEDKAAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_012 HYRGNNNGERINNNNNNDNEKTDSEKEKAVVAVETSDCSNKKIADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEDKAAR 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT5G10 AYDLAALKYWNATATTNFPITNYSKEVEEMKHMTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_012 AYDLAALKYWNATATTNFPITNYSKEVEEMKHMTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAA 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT5G10 IKFRGINAVTNFEMNRYDVEAIMKSALPIGGAAKRLKLSLEAAASSEQKPILGHHQLHHFQQQQQQQQLQLQSSPNHSSINFALCPNSAVQSQQIIPCGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_012 IKFRGINAVTNFEMNRYDVEAIMKSALPIGGAAKRLKLSLEAAASSEQKPILGHHQLHHFQQQQQQQQLQLQSSPNHSSINFALCPNSAVQSQQIIPCGI 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 AT5G10 PFEAAALYHHHQQQQQHQQQQQQQNFFQHFPANAASDSTGSNNNSNVQGTMGLMAPNPAEFFLWPNQSY ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::: RE_012 PFEAAALYHHHQQQQQHQQQQQQQNFFQHFPANAASDSTGSNNNSNVQGTMGLMAPNPAEFLLWPNQSY 510 520 530 540 550 560

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