| Code name | RE_0131 | |||
|---|---|---|---|---|
| Locus | AT5G25390 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列100%一致 | |||
| comment | 0420_アミノ酸配列100%一致 with AT5G25390.2 | |||
| sequence |
>RE_0131_567bp ATGGTACATTCGAAGAAGTTCCGAGGTGTCCGCCAGCGTCAGTGGGGTTCTTGGGTTTCTGAGATTCGTCATCCTCTCTTGAAGAGAAGAGTGTGGCTAG GAACATTCGACACGGCGGAAACAGCGGCTAGAGCCTACGACCAAGCCGCGGTTCTAATGAACGGCCAGAGCGCGAAGACTAACTTCCCCGTCATCAAATC GAACGGTTCAAATTCCTTGGAGATTAACTCTGCGTTAAGGTCTCCCAAATCATTATCGGAACTATTGAACGCTAAGCTAAGGAAGAACTGTAAAGACCAG ACACCGTATTTGACGTGTCTCCGCCTCGACAACGACAGCTCACACATCGGCGTCTGGCAGAAACGCGCCGGGTCAAAAACGAGTCCAAACTGGGTCAAGC TTGTTGAACTAGGTGACAAAGTTAACGCACGTCCCGGTGGTGATATTGAGACTAATAAGATGAAGGTACGAAACGAAGACGTTCAGGAAGATGATCAAAT GGCGATGCAGATGATCGAGGAGTTGCTTAACTGGACCTGTCCTGGATCTGGATCCATTGCACAGGTC >RE_0131_translated MVHSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLMNGQSAKTNFPVIKSNGSNSLEINSALRSPKSLSELLNAKLRKNCKDQ TPYLTCLRLDNDSSHIGVWQKRAGSKTSPNWVKLVELGDKVNARPGGDIETNKMKVRNEDVQEDDQMAMQMIEELLNWTCPGSGSIAQV |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 557/567 (98.2%)（アミノ酸配列で186/189 (98.4%)）一致しました。
10 20 30 40 50 60 70 80 90
AT5G25 ATGGTACATTCGAAGAAGTTCCGAGGTGTCCGCCAGCGTCAGTGGGGTTCTTGGGTTTCTGAGATTCGTCATCCTCTCTT---------AGTGTGGCTAG
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
RE_013 ATGGTACATTCGAAGAAGTTCCGAGGTGTCCGCCAGCGTCAGTGGGGTTCTTGGGTTTCTGAGATTCGTCATCCTCTCTTGAAGAGAAGAGTGTGGCTAG
10 20 30 40 50 60 70 80 90 100
100 110 120 130 140 150 160 170 180 190
AT5G25 GAACATTCGACACGGCGGAAACAGCGGCTAGAGCCTACGACCAAGCCGCGGTTCTAATGAACGGCCAGAGCGCGAAGACTAACTTCCCCGTCATCAAATC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_013 GAACATTCGACACGGCGGAAACAGCGGCTAGAGCCTACGACCAAGCCGCGGTTCTAATGAACGGCCAGAGCGCGAAGACTAACTTCCCCGTCATCAAATC
110 120 130 140 150 160 170 180 190 200
200 210 220 230 240 250 260 270 280 290
AT5G25 GAACGGTTCAAATTCCTTGGAGATTAACTCTGCGTTAAGGTCTCCCAAATCATTATCGGAACTATTGAACGCTAAGCTAAGGAAGAACTGTAAAGACCAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_013 GAACGGTTCAAATTCCTTGGAGATTAACTCTGCGTTAAGGTCTCCCAAATCATTATCGGAACTATTGAACGCTAAGCTAAGGAAGAACTGTAAAGACCAG
210 220 230 240 250 260 270 280 290 300
300 310 320 330 340 350 360 370 380 390
AT5G25 ACACCGTATCTGACGTGTCTCCGCCTCGACAACGACAGCTCACACATCGGCGTCTGGCAGAAACGCGCCGGGTCAAAAACGAGTCCAAACTGGGTCAAGC
::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_013 ACACCGTATTTGACGTGTCTCCGCCTCGACAACGACAGCTCACACATCGGCGTCTGGCAGAAACGCGCCGGGTCAAAAACGAGTCCAAACTGGGTCAAGC
310 320 330 340 350 360 370 380 390 400
400 410 420 430 440 450 460 470 480 490
AT5G25 TTGTTGAACTAGGTGACAAAGTTAACGCACGTCCCGGTGGTGATATTGAGACTAATAAGATGAAGGTACGAAACGAAGACGTTCAGGAAGATGATCAAAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_013 TTGTTGAACTAGGTGACAAAGTTAACGCACGTCCCGGTGGTGATATTGAGACTAATAAGATGAAGGTACGAAACGAAGACGTTCAGGAAGATGATCAAAT
410 420 430 440 450 460 470 480 490 500
500 510 520 530 540 550
AT5G25 GGCGATGCAGATGATCGAGGAGTTGCTTAACTGGACCTGTCCTGGATCTGGATCCATTGCACAGGTC
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_013 GGCGATGCAGATGATCGAGGAGTTGCTTAACTGGACCTGTCCTGGATCTGGATCCATTGCACAGGTC
510 520 530 540 550 560
10 20 30 40 50 60 70 80 90
AT5G25 MVHSKKFRGVRQRQWGSWVSEIRHPLL---VWLGTFDTAETAARAYDQAAVLMNGQSAKTNFPVIKSNGSNSLEINSALRSPKSLSELLNAKLRKNCKDQ
::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_013 MVHSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLMNGQSAKTNFPVIKSNGSNSLEINSALRSPKSLSELLNAKLRKNCKDQ
10 20 30 40 50 60 70 80 90 100
100 110 120 130 140 150 160 170 180
AT5G25 TPYLTCLRLDNDSSHIGVWQKRAGSKTSPNWVKLVELGDKVNARPGGDIETNKMKVRNEDVQEDDQMAMQMIEELLNWTCPGSGSIAQV
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_013 TPYLTCLRLDNDSSHIGVWQKRAGSKTSPNWVKLVELGDKVNARPGGDIETNKMKVRNEDVQEDDQMAMQMIEELLNWTCPGSGSIAQV
110 120 130 140 150 160 170 180
|
|||