| Code name | RE_0136 | |||
|---|---|---|---|---|
| Locus | AT5G50080 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列96.10%一致 | |||
| comment | 0420_アミノ酸配列70%以上一致 | |||
| sequence |
>RE_0136_687bp ATGTCTGCCATGGTCTCGGCCTTGACACAGGTGGTTTCTGCTCGCTCTCAGACTGAGGCTGAAGGTGCTCACTCTCAGACTGAGGCTGAAGGTGCTCACT CTTCTTCCTCTTCGGCTGGACATAAAAGAGGATGGCTTGGAATCGATTCTGCTCCTATTCCCTCATCATTTGCTCGTGTAGACTCTTCACATAATCCGAT CGAAGAATCCATGAGCAAGGCATTTCCAGAGGAAGCAAGGGAGAAAAAAAGGAGGTACAGAGGAGTAAGGCAGAGACCATGGGGCAAATGGGCAGCTGAG ATACGTGATCCACATAGAGCCGCTAGGGTTTGGCTCGGGACGTTTGATACAGCGGAGGCCGCGGCTAGAGCCTACGACGAGGCTGCACTCCGGTTCCGTG GAAATAAAGCAAAGCTAAATTTCCCAGAGGATGTAAGGATTCTTCCTCCTCCCCCTCCTCTTCTTCGTTCACCAGCTGACACGGTGGCGAATAAAGCAGA AGAGGATCTGATAAATTATTGGAGTTATACAAAGTTGTTGCAAAGTTCAGGCCAACGGTCATTTCTCGAGCGAGGACAAGAAGAGAGTAGTAACATATTT GAACATTCACCAATGGAACAACCTCTGCCTCCTTCAAGTTCTGGTCCAAGTTCCTCTAATTTTCCTGCACCTTCTCTACCTAATACA >RE_0136_translated MSAMVSALTQVVSARSQTEAEGAHSQTEAEGAHSSSSSAGHKRGWLGIDSAPIPSSFARVDSSHNPIEESMSKAFPEEAREKKRRYRGVRQRPWGKWAAE IRDPHRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPEDVRILPPPPPLLRSPADTVANKAEEDLINYWSYTKLLQSSGQRSFLERGQEESSNIF EHSPMEQPLPPSSSGPSSSNFPAPSLPNT |
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| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 660/687 (96.1%)（アミノ酸配列で220/229 (96.1%)）一致しました。
10 20 30 40 50 60 70
AT5G50 ATGTCTGCCATGGTCTCGGCCTTGACACAGGTGGTTTCTGCTCG---------------------------CTCTCAGACTGAGGCTGAAGGTGCTCACT
:::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::
RE_013 ATGTCTGCCATGGTCTCGGCCTTGACACAGGTGGTTTCTGCTCGCTCTCAGACTGAGGCTGAAGGTGCTCACTCTCAGACTGAGGCTGAAGGTGCTCACT
10 20 30 40 50 60 70 80 90 100
80 90 100 110 120 130 140 150 160 170
AT5G50 CTTCTTCCTCTTCGGCTGGACATAAAAGAGGATGGCTTGGAATCGATTCTGCTCCTATTCCCTCATCATTTGCTCGTGTAGACTCTTCACATAATCCGAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_013 CTTCTTCCTCTTCGGCTGGACATAAAAGAGGATGGCTTGGAATCGATTCTGCTCCTATTCCCTCATCATTTGCTCGTGTAGACTCTTCACATAATCCGAT
110 120 130 140 150 160 170 180 190 200
180 190 200 210 220 230 240 250 260 270
AT5G50 CGAAGAATCCATGAGCAAGGCATTTCCAGAGGAAGCAAGGGAGAAAAAAAGGAGGTACAGAGGAGTAAGGCAGAGACCATGGGGCAAATGGGCAGCTGAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_013 CGAAGAATCCATGAGCAAGGCATTTCCAGAGGAAGCAAGGGAGAAAAAAAGGAGGTACAGAGGAGTAAGGCAGAGACCATGGGGCAAATGGGCAGCTGAG
210 220 230 240 250 260 270 280 290 300
280 290 300 310 320 330 340 350 360 370
AT5G50 ATACGTGATCCACATAGAGCCGCTAGGGTTTGGCTCGGGACGTTTGATACAGCGGAGGCCGCGGCTAGAGCCTACGACGAGGCTGCACTCCGGTTCCGTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_013 ATACGTGATCCACATAGAGCCGCTAGGGTTTGGCTCGGGACGTTTGATACAGCGGAGGCCGCGGCTAGAGCCTACGACGAGGCTGCACTCCGGTTCCGTG
310 320 330 340 350 360 370 380 390 400
380 390 400 410 420 430 440 450 460 470
AT5G50 GAAATAAAGCAAAGCTAAATTTCCCAGAGGATGTAAGGATTCTTCCTCCTCCCCCTCCTCTTCTTCGTTCACCAGCTGACACGGTGGCGAATAAAGCAGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_013 GAAATAAAGCAAAGCTAAATTTCCCAGAGGATGTAAGGATTCTTCCTCCTCCCCCTCCTCTTCTTCGTTCACCAGCTGACACGGTGGCGAATAAAGCAGA
410 420 430 440 450 460 470 480 490 500
480 490 500 510 520 530 540 550 560 570
AT5G50 AGAGGATCTGATAAATTATTGGAGTTATACAAAGTTGTTGCAAAGTTCAGGCCAACGGTCATTTCTCGAGCGAGGACAAGAAGAGAGTAGTAACATATTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_013 AGAGGATCTGATAAATTATTGGAGTTATACAAAGTTGTTGCAAAGTTCAGGCCAACGGTCATTTCTCGAGCGAGGACAAGAAGAGAGTAGTAACATATTT
510 520 530 540 550 560 570 580 590 600
580 590 600 610 620 630 640 650 660
AT5G50 GAACATTCACCAATGGAACAACCTCTGCCTCCTTCAAGTTCTGGTCCAAGTTCCTCTAATTTTCCTGCACCTTCTCTACCTAATACA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_013 GAACATTCACCAATGGAACAACCTCTGCCTCCTTCAAGTTCTGGTCCAAGTTCCTCTAATTTTCCTGCACCTTCTCTACCTAATACA
610 620 630 640 650 660 670 680
10 20 30 40 50 60 70 80 90
AT5G50 MSAMVSALTQVVSAR---------SQTEAEGAHSSSSSAGHKRGWLGIDSAPIPSSFARVDSSHNPIEESMSKAFPEEAREKKRRYRGVRQRPWGKWAAE
::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_013 MSAMVSALTQVVSARSQTEAEGAHSQTEAEGAHSSSSSAGHKRGWLGIDSAPIPSSFARVDSSHNPIEESMSKAFPEEAREKKRRYRGVRQRPWGKWAAE
10 20 30 40 50 60 70 80 90 100
100 110 120 130 140 150 160 170 180 190
AT5G50 IRDPHRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPEDVRILPPPPPLLRSPADTVANKAEEDLINYWSYTKLLQSSGQRSFLERGQEESSNIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_013 IRDPHRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPEDVRILPPPPPLLRSPADTVANKAEEDLINYWSYTKLLQSSGQRSFLERGQEESSNIF
110 120 130 140 150 160 170 180 190 200
200 210 220
AT5G50 EHSPMEQPLPPSSSGPSSSNFPAPSLPNT
:::::::::::::::::::::::::::::
RE_013 EHSPMEQPLPPSSSGPSSSNFPAPSLPNT
210 220
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