| Code name | RE_0137 | |||
|---|---|---|---|---|
| Locus | AT5G51190 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.50%一致 | |||
| comment | 0229_アミノ酸配列70%以上一致 | |||
| sequence |
>RE_0137_663bp ATGGCTTCTTCACATCAACAACAGCAAGAACAAGACCAGTCAGCTTTAGATCTCATAACCCAACACCTTCTTACTGATTTCCCTTCCTTAGACACCTTTG CCTCCACCATCCACCACTGCACCACCTCAACTCTAAGCCAACGCAAACCACCTCTTGCCACTATAGCAGTTCCTACTACTGCACCGGTGGTTCAAGAGAA TGATCAAAGGCATTACAGAGGCGTCAGGAGAAGACCATGGGGTAAGTATGCGGCTGAGATCAGAGACCCAAACAAGAAAGGTGTTCGTGTCTGGTTAGGC ACTTTTGACACAGCCATGGAAGCTGCAAGAGGTTATGACAAGGCAGCTTTTAAACTACGAGGAAGCAAAGCTATTCTTAACTTCCCACTTGAAGCAGGAA AGCATGAGGACTTGGGAGACAACAAGAAGACTATTTCTTTAAAAGCAAAGAGGAAGAGACAGGTGACGGAGGATGAAAGCCAGCTGATCAGCCGTAAAGC TGTTAAGAGGGAAGAAGCTCAGGTTCAGGCTGATGCTTGTCCATTAACGCCATCAAGTTGGAAGGGGTTTTGGGACGGAGCAGACAGTAAAGACATGGGA ATATTTTCCGTGCCTCTGTTATCTCCTTGTCCATCTCTTGAACACTCTCAACTCGTAGTTACT >RE_0137_translated MASSHQQQQEQDQSALDLITQHLLTDFPSLDTFASTIHHCTTSTLSQRKPPLATIAVPTTAPVVQENDQRHYRGVRRRPWGKYAAEIRDPNKKGVRVWLG TFDTAMEAARGYDKAAFKLRGSKAILNFPLEAGKHEDLGDNKKTISLKAKRKRQVTEDESQLISRKAVKREEAQVQADACPLTPSSWKGFWDGADSKDMG IFSVPLLSPCPSLEHSQLVVT |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 662/663 (99.8%)（アミノ酸配列で220/221 (99.5%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT5G51 ATGGCTTCTTCACATCAACAACAGCAAGAACAAGACCAGTCAGCTTTAGATCTCATAACCCAACACCTTCTTACTGATTTCCCTTCCTTAGACACCTTTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_013 ATGGCTTCTTCACATCAACAACAGCAAGAACAAGACCAGTCAGCTTTAGATCTCATAACCCAACACCTTCTTACTGATTTCCCTTCCTTAGACACCTTTG
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT5G51 CCTCCACCATCCACCACTGCACCACCTCAACTCTAAGCCAACGCAAACCACCTCTTGCCACTATAGCAGTTCCTACTACTGCACCGGTGGTTCAAGAGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_013 CCTCCACCATCCACCACTGCACCACCTCAACTCTAAGCCAACGCAAACCACCTCTTGCCACTATAGCAGTTCCTACTACTGCACCGGTGGTTCAAGAGAA
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT5G51 TGATCAAAGGCATTACAGAGGCGTCAGGAGAAGACCATGGGGTAAGTATGCGGCTGAGATCAGAGACCCAAACAAGAAAGGTGTTCGTGTCTGGTTAGGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_013 TGATCAAAGGCATTACAGAGGCGTCAGGAGAAGACCATGGGGTAAGTATGCGGCTGAGATCAGAGACCCAAACAAGAAAGGTGTTCGTGTCTGGTTAGGC
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT5G51 ACTTTTGACACAGCCATGGAAGCTGCAAGAGGTTATGACAAGGCAGCTTTTAAACTACGAGGAAGCAAAGCTATTCTTAACTTCCCACTTGAAGCAGGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_013 ACTTTTGACACAGCCATGGAAGCTGCAAGAGGTTATGACAAGGCAGCTTTTAAACTACGAGGAAGCAAAGCTATTCTTAACTTCCCACTTGAAGCAGGAA
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT5G51 AGCATGAGGACTTGGGAGACAACAAGAAGACTATTTCTTTAAAAGCAAAGAGGAAGAGACAGGTGACGGAGGATGAAAGCCAGCTGATCAGCCGTAAAGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_013 AGCATGAGGACTTGGGAGACAACAAGAAGACTATTTCTTTAAAAGCAAAGAGGAAGAGACAGGTGACGGAGGATGAAAGCCAGCTGATCAGCCGTAAAGC
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT5G51 TGTTAAGAGGGAAGAAGCTCAGGTTCAGGCTGATGCTTGTCCATTAACGCCATCAAGTTGGAAGGGGTTTTGGGACGGAGCAGACAGTAAAGACATGGGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_013 TGTTAAGAGGGAAGAAGCTCAGGTTCAGGCTGATGCTTGTCCATTAACGCCATCAAGTTGGAAGGGGTTTTGGGACGGAGCAGACAGTAAAGACATGGGA
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660
AT5G51 ATATTTTCCGTGCCTCTGTTATCTCCTTGTCCATCTCTTGGACACTCTCAACTCGTAGTTACT
:::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::
RE_013 ATATTTTCCGTGCCTCTGTTATCTCCTTGTCCATCTCTTGAACACTCTCAACTCGTAGTTACT
610 620 630 640 650 660
10 20 30 40 50 60 70 80 90 100
AT5G51 MASSHQQQQEQDQSALDLITQHLLTDFPSLDTFASTIHHCTTSTLSQRKPPLATIAVPTTAPVVQENDQRHYRGVRRRPWGKYAAEIRDPNKKGVRVWLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_013 MASSHQQQQEQDQSALDLITQHLLTDFPSLDTFASTIHHCTTSTLSQRKPPLATIAVPTTAPVVQENDQRHYRGVRRRPWGKYAAEIRDPNKKGVRVWLG
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT5G51 TFDTAMEAARGYDKAAFKLRGSKAILNFPLEAGKHEDLGDNKKTISLKAKRKRQVTEDESQLISRKAVKREEAQVQADACPLTPSSWKGFWDGADSKDMG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_013 TFDTAMEAARGYDKAAFKLRGSKAILNFPLEAGKHEDLGDNKKTISLKAKRKRQVTEDESQLISRKAVKREEAQVQADACPLTPSSWKGFWDGADSKDMG
110 120 130 140 150 160 170 180 190 200
210 220
AT5G51 IFSVPLLSPCPSLGHSQLVVT
::::::::::::: :::::::
RE_013 IFSVPLLSPCPSLEHSQLVVT
210 220
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