◆◆◆RE_0141 detail◆◆◆

Code name	RE_0141
Locus	AT5G60120
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.80%一致
comment	0422_アミノ酸配列70%以上一致
sequence	>RE_0141_1455bp ATGTTGGATCTCAATCTCGACGTCGACTCGACCGAGTCTACTCAGAACGAACGAGATTCGATTACTGTTAAAGGGGTTTCTTTGAATCAGATGGATGAAT CGGTGACGTCGAACTCTTCTGTTGTTAATGCTGAAGCTTCTAGCTGTATAGATGGTGAAGATGAGTTGTGCTCTACACGAACGGTCAAGTTTCAATTTGA GATACTGAAAGGAGGAGGAGAAGAAGAAGAAGAAGATGATGATGAAAGAAGTGCTGTGATGATGACTAAGGAGTTTTTTCCTGTTGCTAAAGGCATGAAC TTTATGGATTCGAGCGCTCAAAGTTCAAGGAGCACCGTTGATATTTCCTTCCAGAGGGGGAAACAAGGTGGAGACTTTATAGGTAGCGGGAGCGGTGGTG GCGATGCTTCACGGGTGATGCAGCCACCATCACAGCCGGTGAAGAAAAGCAGGAGAGGTCCTAGGTCTAAGAGTTCTCAGTATAGAGGCGTCACTTTCTA TCGGAGGACAGGCAGATGGGAATCGCATATCTGGGATTGCGGTAAACAAGTTTATTTAGGTGGATTTGATACTGCCCATGCTGCAGCTAGGGCGTATGAT CGAGCTGCTGTCAAATTCCGGGGTCTGGAAGCTGACATCAATTTCGTTATTGGCGATTATGAAGAGGATCTCAAGCAGATGGCGAATCTTTCCAAAGAGG AAGTTGTGCAAGTACTTCGGCGACAGAGCTCTGGTTTCTCAAGGAATAATTCTAGATATCAAGGAGTTGCTTTGCAAAAGATTGGCGGGTGGGGAGCTCA AATGGAGCAGCTTCATGGAAACATGGGTTGTGACAAGGCAGCCGTACAATGGAAGGGAAGGGAAGCTGCTTCCTTAATTGAGCCTCATGCATCCCGAATG ATTCCCGAGGCAGCTAATGTTAAGCTCGACCTCAACTTGGGAATCTCTCTTTCACTAGGAGATGGTCCGAAGCAAAAAGATAGGGCCCTCCGGCTTCACC ATGTCCCTAACAATTCCGTATGTGGAAGGAACACCATGATGGAGAACCACATGGCTGCAGCGGCATGTGATACGCCTTTCAATTTCTTGAAGAGGGGTTC AGACCATCTTAATAACCGGCATGCCCTTCCTTCTGCGTTCTTTTCACCCACGGAAAGAACACCAGAGAAAGGGCTTATGTTACGTTCTCATCAAAGCTTC CCAGCCAGGACATGGCAAGGGCATGATCAGTCCAGTGGTGGGACCGCCGTAGCAGCTACAGCACCGCCACTGTTTTCAAATGCAGCATCATCAGGATTCT CACTCTCAGCTACACGCCCTCCTTCATCCACAGCTATTCATCATCCTTCTCAGCCCTTCGTCAATCTGAATCAGCCCGGTCTCTATGTTATCCACCCATC TGATTACATATCTCAGCACCAACACAATCTCATGAACCGCCCACAACCACCACCA >RE_0141_translated MLDLNLDVDSTESTQNERDSITVKGVSLNQMDESVTSNSSVVNAEASSCIDGEDELCSTRTVKFQFEILKGGGEEEEEDDDERSAVMMTKEFFPVAKGMN FMDSSAQSSRSTVDISFQRGKQGGDFIGSGSGGGDASRVMQPPSQPVKKSRRGPRSKSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYD RAAVKFRGLEADINFVIGDYEEDLKQMANLSKEEVVQVLRRQSSGFSRNNSRYQGVALQKIGGWGAQMEQLHGNMGCDKAAVQWKGREAASLIEPHASRM IPEAANVKLDLNLGISLSLGDGPKQKDRALRLHHVPNNSVCGRNTMMENHMAAAACDTPFNFLKRGSDHLNNRHALPSAFFSPTERTPEKGLMLRSHQSF PARTWQGHDQSSGGTAVAATAPPLFSNAASSGFSLSATRPPSSTAIHHPSQPFVNLNQPGLYVIHPSDYISQHQHNLMNRPQPPP
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1453/1455 (99.9%)（アミノ酸配列で484/485 (99.8%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT5G60 ATGCTGGATCTCAATCTCGACGTCGACTCGACCGAGTCTACTCAGAACGAACGAGATTCGATTACTGTTAAAGGGGTTTCTTTGAATCAGATGGATGAAT ::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_014 ATGTTGGATCTCAATCTCGACGTCGACTCGACCGAGTCTACTCAGAACGAACGAGATTCGATTACTGTTAAAGGGGTTTCTTTGAATCAGATGGATGAAT 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT5G60 CGGTGACGTCGAACTCTTCTGTTGTTAATGCTGAAGCTTCTAGCTGTATAGATGGTGAAGATGAGTTGTGCTCTACACGAACGGTCAAGTTTCAATTTGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_014 CGGTGACGTCGAACTCTTCTGTTGTTAATGCTGAAGCTTCTAGCTGTATAGATGGTGAAGATGAGTTGTGCTCTACACGAACGGTCAAGTTTCAATTTGA 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT5G60 GATACTGAAAGGAGGAGGAGAAGAAGAAGAAGAAGATGATGATGAAAGAAGTGCTGTGATGATGACTAAGGAGTTTTTTCCTGTTGCTAAAGGCATGAAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_014 GATACTGAAAGGAGGAGGAGAAGAAGAAGAAGAAGATGATGATGAAAGAAGTGCTGTGATGATGACTAAGGAGTTTTTTCCTGTTGCTAAAGGCATGAAC 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT5G60 TTTATGGATTCGAGCGCTCAAAGTTCAAGGAGCACCGTTGATATTTCCTTCCAGAGGGGGAAACAAGGTGGAGACTTTATAGGTAGCGGGAGCGGTGGTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_014 TTTATGGATTCGAGCGCTCAAAGTTCAAGGAGCACCGTTGATATTTCCTTCCAGAGGGGGAAACAAGGTGGAGACTTTATAGGTAGCGGGAGCGGTGGTG 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT5G60 GCGATGCTTCACGGGTGATGCAGCCACCATCACAGCCGGTGAAGAAAAGCAGGAGAGGTCCTAGGTCTAAGAGTTCTCAGTATAGAGGCGTCACTTTCTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_014 GCGATGCTTCACGGGTGATGCAGCCACCATCACAGCCGGTGAAGAAAAGCAGGAGAGGTCCTAGGTCTAAGAGTTCTCAGTATAGAGGCGTCACTTTCTA 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT5G60 TCGGAGGACAGGCAGATGGGAATCGCATATCTGGGATTGCGGTAAACAAGTTTATTTAGGTGGATTTGATACTGCCCATGCTGCAGCTAGGGCGTATGAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_014 TCGGAGGACAGGCAGATGGGAATCGCATATCTGGGATTGCGGTAAACAAGTTTATTTAGGTGGATTTGATACTGCCCATGCTGCAGCTAGGGCGTATGAT 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT5G60 CGAGCTGCTGTCAAATTCCGGGGTCTGGAAGCTGACATCAATTTCGTTATTGGCGATTATGAAGAGGATCTCAAGCAGATGGCGAATCTTTCCAAAGAGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_014 CGAGCTGCTGTCAAATTCCGGGGTCTGGAAGCTGACATCAATTTCGTTATTGGCGATTATGAAGAGGATCTCAAGCAGATGGCGAATCTTTCCAAAGAGG 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT5G60 AAGTTGTGCAAGTACTTCGGCGACAGAGCTCTGGTTTCTCAAGGAATAATTCTAGATATCAAGGAGTTGCTTTGCAAAAGATTGGCGGGTGGGGAGCTCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_014 AAGTTGTGCAAGTACTTCGGCGACAGAGCTCTGGTTTCTCAAGGAATAATTCTAGATATCAAGGAGTTGCTTTGCAAAAGATTGGCGGGTGGGGAGCTCA 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT5G60 AATGGAGCAGCTTCATGGAAACATGGGTTGTGACAAGGCAGCCGTACAATGGAAGGGAAGGGAAGCTGCTTCCTTAATTGAGCCTCATGCATCCCGAATG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_014 AATGGAGCAGCTTCATGGAAACATGGGTTGTGACAAGGCAGCCGTACAATGGAAGGGAAGGGAAGCTGCTTCCTTAATTGAGCCTCATGCATCCCGAATG 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT5G60 ATTCCCGAGGCAGCTAATGTTAAGCTCGACCTCAACTTGGGAATCTCTCTTTCACTAGGAGATGGTCCGAAGCAAAAAGATAGGGCCCTCCGGCTTCACC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_014 ATTCCCGAGGCAGCTAATGTTAAGCTCGACCTCAACTTGGGAATCTCTCTTTCACTAGGAGATGGTCCGAAGCAAAAAGATAGGGCCCTCCGGCTTCACC 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT5G60 ATGTCCCTAACAATTCCGTATGTGGAAGGAACACCATGATGGAGAACCACATGGCTGCAGCGGCATGTGATACGCCTTTCAATTTCTTGAAGAGGGGTTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_014 ATGTCCCTAACAATTCCGTATGTGGAAGGAACACCATGATGGAGAACCACATGGCTGCAGCGGCATGTGATACGCCTTTCAATTTCTTGAAGAGGGGTTC 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT5G60 AGACCATCTTAATAACCGGCATGCCCTTCCTTCTGCGTTCTTTTCACCCATGGAAAGAACACCAGAGAAAGGGCTTATGTTACGTTCTCATCAAAGCTTC :::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::: RE_014 AGACCATCTTAATAACCGGCATGCCCTTCCTTCTGCGTTCTTTTCACCCACGGAAAGAACACCAGAGAAAGGGCTTATGTTACGTTCTCATCAAAGCTTC 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 AT5G60 CCAGCCAGGACATGGCAAGGGCATGATCAGTCCAGTGGTGGGACCGCCGTAGCAGCTACAGCACCGCCACTGTTTTCAAATGCAGCATCATCAGGATTCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_014 CCAGCCAGGACATGGCAAGGGCATGATCAGTCCAGTGGTGGGACCGCCGTAGCAGCTACAGCACCGCCACTGTTTTCAAATGCAGCATCATCAGGATTCT 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 AT5G60 CACTCTCAGCTACACGCCCTCCTTCATCCACAGCTATTCATCATCCTTCTCAGCCCTTCGTCAATCTGAATCAGCCCGGTCTCTATGTTATCCACCCATC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_014 CACTCTCAGCTACACGCCCTCCTTCATCCACAGCTATTCATCATCCTTCTCAGCCCTTCGTCAATCTGAATCAGCCCGGTCTCTATGTTATCCACCCATC 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 1410 1420 1430 1440 1450 AT5G60 TGATTACATATCTCAGCACCAACACAATCTCATGAACCGCCCACAACCACCACCA ::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_014 TGATTACATATCTCAGCACCAACACAATCTCATGAACCGCCCACAACCACCACCA 1410 1420 1430 1440 1450 10 20 30 40 50 60 70 80 90 100 AT5G60 MLDLNLDVDSTESTQNERDSITVKGVSLNQMDESVTSNSSVVNAEASSCIDGEDELCSTRTVKFQFEILKGGGEEEEEDDDERSAVMMTKEFFPVAKGMN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_014 MLDLNLDVDSTESTQNERDSITVKGVSLNQMDESVTSNSSVVNAEASSCIDGEDELCSTRTVKFQFEILKGGGEEEEEDDDERSAVMMTKEFFPVAKGMN 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT5G60 FMDSSAQSSRSTVDISFQRGKQGGDFIGSGSGGGDASRVMQPPSQPVKKSRRGPRSKSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_014 FMDSSAQSSRSTVDISFQRGKQGGDFIGSGSGGGDASRVMQPPSQPVKKSRRGPRSKSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYD 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT5G60 RAAVKFRGLEADINFVIGDYEEDLKQMANLSKEEVVQVLRRQSSGFSRNNSRYQGVALQKIGGWGAQMEQLHGNMGCDKAAVQWKGREAASLIEPHASRM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_014 RAAVKFRGLEADINFVIGDYEEDLKQMANLSKEEVVQVLRRQSSGFSRNNSRYQGVALQKIGGWGAQMEQLHGNMGCDKAAVQWKGREAASLIEPHASRM 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT5G60 IPEAANVKLDLNLGISLSLGDGPKQKDRALRLHHVPNNSVCGRNTMMENHMAAAACDTPFNFLKRGSDHLNNRHALPSAFFSPMERTPEKGLMLRSHQSF ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::: RE_014 IPEAANVKLDLNLGISLSLGDGPKQKDRALRLHHVPNNSVCGRNTMMENHMAAAACDTPFNFLKRGSDHLNNRHALPSAFFSPTERTPEKGLMLRSHQSF 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 AT5G60 PARTWQGHDQSSGGTAVAATAPPLFSNAASSGFSLSATRPPSSTAIHHPSQPFVNLNQPGLYVIHPSDYISQHQHNLMNRPQPPP ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_014 PARTWQGHDQSSGGTAVAATAPPLFSNAASSGFSLSATRPPSSTAIHHPSQPFVNLNQPGLYVIHPSDYISQHQHNLMNRPQPPP 410 420 430 440 450 460 470 480

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