◆◆◆RE_0147 detail◆◆◆

Code name	RE_0147
Locus	AT5G65510
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列97.70%一致
comment	0311_アミノ酸配列70%以上一致, AT5G65510.2_by_RIKE読まれた配列に有N
sequence	>RE_0147_1320bp ATGGCGGATTCAACAACCTTATCTACTTTTTTCGATCATTCTCAGACTCAGATTCCAAAGCTGGAAGATTTCCTCGGTGATTCCTTTGTCCGTTACTCTG ATAACCAAACAGAGACCCAAGACTCTTCTTCTCTCACTCCATTCTACGATCCACGTCACCGCACCGTTGCCGAAGGAGTTACAGGGTTCTTCTCTGATCA TCATCAGCCAGATTTCAAGACGATAAACTCGGGACCAGAAATCTTCGATGACTCAACAACTTCCAACATCGGTGGTACTCATCTCTCCAGTCACGTGGTG GAGTCATCAACGACGGCGAAGTTAGGGTTTAACGGTGATTGCACCACCACCGGAGGAGTTTTGTCTCTAGGGGTTAACAACACATCAGATCAACCTTTGA GCTGTAACAATGGCGAGAGAGGTGGAAACAGTAACAAGAAGAAAACAGTTTCTAAGAAGGAAACATCAGATGATTCAAAGAAGAAGATTGTCGAAACATT GGGACAAAGAACTTCAATTTATCGTGGAGTCACCCTACCTACATTGACTGGAAGATACGAAGCGCATCTATTGGATAACAGCTTTTTGACGGAAGGTCAA GCCAGAACAGGACGTCTAGTGTACTTAGGTGGATATGACAAGGAAGATAGAGCAGCTAGAGCCTATGACTTGGCAGCTTTAAAATACTGGGGTTCTACTG CTACTACAAATTTTCCGGTCTCGAGTTATTCAAAAGAACTTGAGGAAATGAATCACATGACCAAGCAAGAGTTTATTGCATCTCTTAGGAGGAAAAGTAG CGGTTTTTCGAGAGGAGCTTCAATATATCGAGGTGTCACAAGGCATCATCAACAAGGTCGCTGGCAAGCAAGAATCGGCCGTGTCGCAGGAAACAAAGAT CTTTACCTCGGAACCTTTGCAACCGAAGAGGAAGCAGCAGAGGCTTATGACATTGCAGCCATAAAGTTCAGAGGAATCAACGCAGTAACTAACTTTGAGA TGAACAGGTATGACATTGAAGCTGTCATGAATAGTTCTTTACCTGTAGGAGGAGCAGCTGCGAAACGCCACAAACTCAAACTCGCTCTTGAATCTCCTTC TTCATCATCCTCTGACCATAACCTCCAACAACAACAGTTGCTTCCGTCCTCTTCTCCCTCGGATCAAAACCCTAACTCAATCCCATGTGGCATTCCATTT GAGCCTTCAGTTCTCTATTACCACCAGAACTTCTTTCAGCATTATCCTTTGGTCTCTGACTCTACAATTCAAGCTCCTATGAACCAAGCTGAGTTTTTCT TGTGGCCTAACCAGTCTTAC >RE_0147_translated MADSTTLSTFFDHSQTQIPKLEDFLGDSFVRYSDNQTETQDSSSLTPFYDPRHRTVAEGVTGFFSDHHQPDFKTINSGPEIFDDSTTSNIGGTHLSSHVV ESSTTAKLGFNGDCTTTGGVLSLGVNNTSDQPLSCNNGERGGNSNKKKTVSKKETSDDSKKKIVETLGQRTSIYRGVTLPTLTGRYEAHLLDNSFLTEGQ ARTGRLVYLGGYDKEDRAARAYDLAALKYWGSTATTNFPVSSYSKELEEMNHMTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKD LYLGTFATEEEAAEAYDIAAIKFRGINAVTNFEMNRYDIEAVMNSSLPVGGAAAKRHKLKLALESPSSSSSDHNLQQQQLLPSSSPSDQNPNSIPCGIPF EPSVLYYHQNFFQHYPLVSDSTIQAPMNQAEFFLWPNQSY
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1308/1494 (87.6%)（アミノ酸配列で430/498 (86.3%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT5G65 ATGGCTCCTCCAATGACGAATTGCTTAACGTTTTCTCTGTCACCAATGGAGATGTTGAAATCAACTGATCAGTCTCACTTCTCTTCTTCTTACGACGATT RE_014 ---------------------------------------------------------------------------------------------------- 110 120 130 140 150 160 170 180 190 200 AT5G65 CTTCTACTCCTTATCTCATCGATAACTTCTATGCTTTCAAAGAAGAAGCTGAGATAGAAGCTGCTGCTGCTTCAATGGCGGATTCAACAACCTTATCTAC :::::::::::::::::::::::::: RE_014 --------------------------------------------------------------------------ATGGCGGATTCAACAACCTTATCTAC 10 20 210 220 230 240 250 260 270 280 290 300 AT5G65 TTTTTTCGATCATTCTCAGACTCAGATTCCAAAGCTGGAAGATTTCCTCGGTGATTCCTTTGTCCGTTACTCTGATAACCAAACAGAGACCCAAGACTCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_014 TTTTTTCGATCATTCTCAGACTCAGATTCCAAAGCTGGAAGATTTCCTCGGTGATTCCTTTGTCCGTTACTCTGATAACCAAACAGAGACCCAAGACTCT 30 40 50 60 70 80 90 100 110 120 310 320 330 340 350 360 370 380 390 400 AT5G65 TCTTCTCTCACTCCATTCTACGATCCACGTCACCGCACCGTTGCCGAAGGAGTTACAGGGTTCTTCTCTGATCATCATCAGCCAGATTTCAAGACGATAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_014 TCTTCTCTCACTCCATTCTACGATCCACGTCACCGCACCGTTGCCGAAGGAGTTACAGGGTTCTTCTCTGATCATCATCAGCCAGATTTCAAGACGATAA 130 140 150 160 170 180 190 200 210 220 410 420 430 440 450 460 470 480 490 500 AT5G65 ACTCGGGACCAGAAATCTTCGATGACTCAACAACTTCCAACATCGGTGGTACTCATCTCTCCAGTCACGTGGTGGAGTCATCAACGACGGCGAAGTTAGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_014 ACTCGGGACCAGAAATCTTCGATGACTCAACAACTTCCAACATCGGTGGTACTCATCTCTCCAGTCACGTGGTGGAGTCATCAACGACGGCGAAGTTAGG 230 240 250 260 270 280 290 300 310 320 510 520 530 540 550 560 570 580 590 600 AT5G65 GTTTAACGGTGATTGCACCACCACCGGAGGAGTTTTGTCTCTAGGGGTTAACAACACATCAGATCAACCTTTGAGCTGTAACAATGGCGAGAGAGGTGGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_014 GTTTAACGGTGATTGCACCACCACCGGAGGAGTTTTGTCTCTAGGGGTTAACAACACATCAGATCAACCTTTGAGCTGTAACAATGGCGAGAGAGGTGGA 330 340 350 360 370 380 390 400 410 420 610 620 630 640 650 660 670 680 690 700 AT5G65 AACAGTAACAAGAAGAAAACAGTTTCTAAGAAGGAAACATCAGATGATTCAAAGAAGAAGATTGTCGAAACATTGGGACAAAGAACTTCAATTTATCGTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_014 AACAGTAACAAGAAGAAAACAGTTTCTAAGAAGGAAACATCAGATGATTCAAAGAAGAAGATTGTCGAAACATTGGGACAAAGAACTTCAATTTATCGTG 430 440 450 460 470 480 490 500 510 520 710 720 730 740 750 760 770 780 790 800 AT5G65 GAGTCACCCGACATAGATGGACTGGAAGATACGAAGCGCATCTATGGGATAACAGCTGTAGGAGGGAAGGTCAAGCCAGAAAAGGACGTCAAGTGTACTT ::::::::: :: :: :: :::::::::::::::::::::::::: ::::::::::: : :: ::::::::::::::::: :::::::: ::::::::: RE_014 GAGTCACCCTACCTACATTGACTGGAAGATACGAAGCGCATCTATTGGATAACAGCTTTTTGACGGAAGGTCAAGCCAGAACAGGACGTCTAGTGTACTT 530 540 550 560 570 580 590 600 610 620 810 820 830 840 850 860 870 880 890 900 AT5G65 AGGTGGATATGACAAGGAAGATAGAGCAGCTAGAGCCTATGACTTGGCAGCTTTAAAATACTGGGGTTCTACTGCTACTACAAATTTTCCGGTCTCGAGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_014 AGGTGGATATGACAAGGAAGATAGAGCAGCTAGAGCCTATGACTTGGCAGCTTTAAAATACTGGGGTTCTACTGCTACTACAAATTTTCCGGTCTCGAGT 630 640 650 660 670 680 690 700 710 720 910 920 930 940 950 960 970 980 990 1000 AT5G65 TATTCAAAAGAACTTGAGGAAATGAATCACATGACCAAGCAAGAGTTTATTGCATCTCTTAGGAGGAAAAGTAGCGGTTTTTCGAGAGGAGCTTCAATAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_014 TATTCAAAAGAACTTGAGGAAATGAATCACATGACCAAGCAAGAGTTTATTGCATCTCTTAGGAGGAAAAGTAGCGGTTTTTCGAGAGGAGCTTCAATAT 730 740 750 760 770 780 790 800 810 820 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT5G65 ATAGAGGTGTCACAAGGCATCATCAACAAGGTCGCTGGCAAGCAAGAATCGGCCGTGTCGCAGGAAACAAAGATCTTTACCTCGGAACCTTTGCAACCGA :: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_014 ATCGAGGTGTCACAAGGCATCATCAACAAGGTCGCTGGCAAGCAAGAATCGGCCGTGTCGCAGGAAACAAAGATCTTTACCTCGGAACCTTTGCAACCGA 830 840 850 860 870 880 890 900 910 920 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT5G65 AGAGGAAGCAGCAGAGGCTTATGACATTGCAGCCATAAAGTTCAGAGGAATCAACGCAGTAACTAACTTTGAGATGAACAGGTATGACATTGAAGCTGTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_014 AGAGGAAGCAGCAGAGGCTTATGACATTGCAGCCATAAAGTTCAGAGGAATCAACGCAGTAACTAACTTTGAGATGAACAGGTATGACATTGAAGCTGTC 930 940 950 960 970 980 990 1000 1010 1020 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 AT5G65 ATGAATAGTTCTTTACCTGTAGGAGGAGCAGCTGCGAAACGCCACAAACTCAAACTCGCTCTTGAATCTCCTTCTTCATCATCCTCTGACCATAACCTCC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_014 ATGAATAGTTCTTTACCTGTAGGAGGAGCAGCTGCGAAACGCCACAAACTCAAACTCGCTCTTGAATCTCCTTCTTCATCATCCTCTGACCATAACCTCC 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 AT5G65 AACAACAACAGTTGCTTCCGTCCTCTTCTCCCTCGGATCAAAACCCTAACTCAATCCCATGTGGCATTCCATTTGAGCCTTCAGTTCTCTATTACCACCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_014 AACAACAACAGTTGCTTCCGTCCTCTTCTCCCTCGGATCAAAACCCTAACTCAATCCCATGTGGCATTCCATTTGAGCCTTCAGTTCTCTATTACCACCA 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1410 1420 1430 1440 1450 1460 1470 1480 1490 AT5G65 GAACTTCTTTCAGCATTATCCTTTGGTCTCTGACTCTACAATTCAAGCTCCTATGAACCAAGCTGAGTTTTTCTTGTGGCCTAACCAGTCTTAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_014 GAACTTCTTTCAGCATTATCCTTTGGTCTCTGACTCTACAATTCAAGCTCCTATGAACCAAGCTGAGTTTTTCTTGTGGCCTAACCAGTCTTAC 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 10 20 30 40 50 60 70 80 90 100 AT5G65 MAPPMTNCLTFSLSPMEMLKSTDQSHFSSSYDDSSTPYLIDNFYAFKEEAEIEAAAASMADSTTLSTFFDHSQTQIPKLEDFLGDSFVRYSDNQTETQDS :::::::::::::::::::::::::::::::::::::::::: RE_014 ----------------------------------------------------------MADSTTLSTFFDHSQTQIPKLEDFLGDSFVRYSDNQTETQDS 10 20 30 40 110 120 130 140 150 160 170 180 190 200 AT5G65 SSLTPFYDPRHRTVAEGVTGFFSDHHQPDFKTINSGPEIFDDSTTSNIGGTHLSSHVVESSTTAKLGFNGDCTTTGGVLSLGVNNTSDQPLSCNNGERGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_014 SSLTPFYDPRHRTVAEGVTGFFSDHHQPDFKTINSGPEIFDDSTTSNIGGTHLSSHVVESSTTAKLGFNGDCTTTGGVLSLGVNNTSDQPLSCNNGERGG 50 60 70 80 90 100 110 120 130 140 210 220 230 240 250 260 270 280 290 300 AT5G65 NSNKKKTVSKKETSDDSKKKIVETLGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEDRAARAYDLAALKYWGSTATTNFPVSS :::::::::::::::::::::::::::::::::::: :::::::: ::: ::::: :: :::::::::::::::::::::::::::::::::::: RE_014 NSNKKKTVSKKETSDDSKKKIVETLGQRTSIYRGVTLPTLTGRYEAHLLDNSFLTEGQARTGRLVYLGGYDKEDRAARAYDLAALKYWGSTATTNFPVSS 150 160 170 180 190 200 210 220 230 240 310 320 330 340 350 360 370 380 390 400 AT5G65 YSKELEEMNHMTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGINAVTNFEMNRYDIEAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_014 YSKELEEMNHMTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGINAVTNFEMNRYDIEAV 250 260 270 280 290 300 310 320 330 340 410 420 430 440 450 460 470 480 490 AT5G65 MNSSLPVGGAAAKRHKLKLALESPSSSSSDHNLQQQQLLPSSSPSDQNPNSIPCGIPFEPSVLYYHQNFFQHYPLVSDSTIQAPMNQAEFFLWPNQSY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_014 MNSSLPVGGAAAKRHKLKLALESPSSSSSDHNLQQQQLLPSSSPSDQNPNSIPCGIPFEPSVLYYHQNFFQHYPLVSDSTIQAPMNQAEFFLWPNQSY 350 360 370 380 390 400 410 420 430 440

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