◆◆◆RE_0162 detail◆◆◆

Code name	RE_0162
Locus	AT2G46530
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.50%一致
comment	0428_アミノ酸配列70%以上一致
sequence	>RE_0162_1803bp ATGGCGAATGTGGAAGCTGATTTCAGAACATCAGGGTCTAATGATGATGAATTGTACACGGAGCTATGGAAAGCTTGTGCAGGGCCACTTGTGGAAGCTC CTCGTTATGGTGAAAGAGTTTTCTACTTCCCTCAAGGTCACATGGAACAATTGGTTGCTTCGACTAATCAAGGAGTTGTTGATCAAGAGATACCAGTGTT TAATCTTCCTCCAAAGATACTTTGTCGTGTTCTTAGTGCTACGTTAAAAGCAGAACATGAGACCGATGAGGTTTACGCTCAGATCACATTACAACCAGAA GAAGATCAAAGTGAACCAACAAGTCTTGACCCACCTTTAGTAGAACCAGCTAAACCAACGGTTGATTCTTTTGTGAAGATTCTAACAGCTTCAGATACAA GCACACATGGTGGATTCTCTGTTCTTCGTAAACACGCCACTGAGTGTTTACCTTCACTTGATATGACACAACCTACACCGACTCAAGAACTTGTAGCTAG AGATCTTCACGGCTATGAATGGAGGTTTAAGCATATATTTAGAGGGCAACCGAGGAGGCATTTACTTACAACCGGTTGGAGTACATTTGTAACCTCGAAA AGACTTGTAGCTGGAGATGCATTTGTGTTCTTGAGGGGTGAAACCGGGGATTTACGGGTTGGTGTGAGGCGTTTAGCTAAGCAGCAAAGCACGATGCCCG CATCCGTTATTTCGAGTCAGAGTATGCGTTTGGGAGTTCTTGCTACAGCTTCTCATGCTGTTACCACAACAACTATATTTGTTGTCTTCTATAAACCAAG GATAAGCCAGTTTATAATTAGTGTGAACAAGTATATGATGGCGATGAAGAACGGGTTTTCTCTCGGTATGCGGTATAGGATGAGATTCGAAGGAGAAGAG TCTCCTGAGAGAATATTTACAGGTACCATTATTGGCAGTGGAGATCTATCTTCTCAATGGCCAGCTTCCAAATGGAGGTCATTGCAGATCCAATGGGACG AGCCATCTTCTATACAGAGACCAAACAAGGTCTCACCGTGGGAGATCGAGCCTTTCTCACCATCCGCGCTTACACCAACCCCTACTCAACAACAATCAAA GTCCAAACGGTCCAGACCAATCTCAGAAATCACAGGGAGTCCTGTAGCTTCTAGTTTCTTGAGTAGTTTCTCGCAGAGCCACGAGTCTAATCCATCGGTC AAACTGTTGTTTCAAGATCCAGCAACCGAGAGAAACTCAAACGAATCAGTGTTTTCAAGTGGATTACAATGCAAGATAACCGAGGCTCCGGTCACAAGTA GTTGTAGGTTATTCGGATTCGATCTCACGAGCAAGCCTGCTTCTGCTACAATTCCTCATGACAAGCAGCTAATAAGTGTGGATTCAAATATATCTGATTC TACCACCAAGTGTCAAGATCCTAACTCTTCAAACTCACCAAAAGAGCAGAAACAACAAACATCCACAAGAAGCCGAATCAAGGTGCAAATGCAAGGAACA GCGGTTGGACGCGCGGTTGATTTAACATTGTTGAGATCATACGATGAACTAATAAAAGAGCTAGAGAAAATGTTTGAGATTGAAGGAGAACTTAGTCCTA AAGACAAATGGGCTATCGTGTTTACAGACGATGAAGGAGATAGGATGCTTGTAGGAGATGATCCATGGAATGAGTTCTGTAAAATGGCAAAGAAGTTATT CATATATCCGAGTGATGAGGTCAAGAAAATGAGGTCGAAGTCGTTGTTGGGTGATAAAGGTACGATCGTAAATCTTGAATCAGATCAGAGGACAGTTCAC GTT >RE_0162_translated MANVEADFRTSGSNDDELYTELWKACAGPLVEAPRYGERVFYFPQGHMEQLVASTNQGVVDQEIPVFNLPPKILCRVLSATLKAEHETDEVYAQITLQPE EDQSEPTSLDPPLVEPAKPTVDSFVKILTASDTSTHGGFSVLRKHATECLPSLDMTQPTPTQELVARDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSK RLVAGDAFVFLRGETGDLRVGVRRLAKQQSTMPASVISSQSMRLGVLATASHAVTTTTIFVVFYKPRISQFIISVNKYMMAMKNGFSLGMRYRMRFEGEE SPERIFTGTIIGSGDLSSQWPASKWRSLQIQWDEPSSIQRPNKVSPWEIEPFSPSALTPTPTQQQSKSKRSRPISEITGSPVASSFLSSFSQSHESNPSV KLLFQDPATERNSNESVFSSGLQCKITEAPVTSSCRLFGFDLTSKPASATIPHDKQLISVDSNISDSTTKCQDPNSSNSPKEQKQQTSTRSRIKVQMQGT AVGRAVDLTLLRSYDELIKELEKMFEIEGELSPKDKWAIVFTDDEGDRMLVGDDPWNEFCKMAKKLFIYPSDEVKKMRSKSLLGDKGTIVNLESDQRTVH V
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1800/1803 (99.8%)（アミノ酸配列で598/601 (99.5%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT2G46 ATGGCGAATGTGGAAGCTGATTTCAGAACATCAGGGTCTAATGATGATGAATTGTACACGGAGCTATGGAAAGCTTGTGCAGGGCCACTTGTGGAAGTTC ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :: RE_016 ATGGCGAATGTGGAAGCTGATTTCAGAACATCAGGGTCTAATGATGATGAATTGTACACGGAGCTATGGAAAGCTTGTGCAGGGCCACTTGTGGAAGCTC 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT2G46 CTCGTTATGGTGAAAGAGTTTTCTACTTCCCTCAAGGTCACATGGAACAATTGGTTGCTTCGACTAATCAAGGAGTTGTTGATCAAGAGATACCAGTGTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_016 CTCGTTATGGTGAAAGAGTTTTCTACTTCCCTCAAGGTCACATGGAACAATTGGTTGCTTCGACTAATCAAGGAGTTGTTGATCAAGAGATACCAGTGTT 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT2G46 TAATCTTCCTCCAAAGATACTTTGTCGTGTTCTTAGTGTTACGTTAAAAGCAGAACATGAGACCGATGAGGTTTACGCTCAGATCACATTACAACCAGAA :::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_016 TAATCTTCCTCCAAAGATACTTTGTCGTGTTCTTAGTGCTACGTTAAAAGCAGAACATGAGACCGATGAGGTTTACGCTCAGATCACATTACAACCAGAA 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT2G46 GAAGATCAAAGTGAACCAACAAGTCTTGACCCACCTTTAGTAGAACCAGCTAAACCAACGGTTGATTCTTTTGTGAAGATTCTAACAGCTTCAGATACAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_016 GAAGATCAAAGTGAACCAACAAGTCTTGACCCACCTTTAGTAGAACCAGCTAAACCAACGGTTGATTCTTTTGTGAAGATTCTAACAGCTTCAGATACAA 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT2G46 GCACACATGGTGGATTCTCTGTTCTTCGTAAACACGCCACTGAGTGTTTACCTTCACTTGATATGACACAACCTACACCGACTCAAGAACTTGTAGCTAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_016 GCACACATGGTGGATTCTCTGTTCTTCGTAAACACGCCACTGAGTGTTTACCTTCACTTGATATGACACAACCTACACCGACTCAAGAACTTGTAGCTAG 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT2G46 AGATCTTCACGGCTATGAATGGAGGTTTAAGCATATATTTAGAGGGCAACCGAGGAGGCATTTACTTACAACCGGTTGGAGTACATTTGTAACCTCGAAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_016 AGATCTTCACGGCTATGAATGGAGGTTTAAGCATATATTTAGAGGGCAACCGAGGAGGCATTTACTTACAACCGGTTGGAGTACATTTGTAACCTCGAAA 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT2G46 AGACTTGTAGCTGGAGATGCATTTGTGTTCTTGAGGGGTGAAACCGGGGATTTACGGGTTGGTGTGAGGCGTTTAGCTAAGCAGCAAAGCACGATGCCCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_016 AGACTTGTAGCTGGAGATGCATTTGTGTTCTTGAGGGGTGAAACCGGGGATTTACGGGTTGGTGTGAGGCGTTTAGCTAAGCAGCAAAGCACGATGCCCG 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT2G46 CATCCGTTATTTCGAGTCAGAGTATGCGTTTGGGAGTTCTTGCTACAGCTTCTCATGCTGTTACCACAACAACTATATTTGTTGTCTTCTATAAACCAAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_016 CATCCGTTATTTCGAGTCAGAGTATGCGTTTGGGAGTTCTTGCTACAGCTTCTCATGCTGTTACCACAACAACTATATTTGTTGTCTTCTATAAACCAAG 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT2G46 GATAAGCCAGTTTATAATTAGTGTGAACAAGTATATGATGGCGATGAAGAACGGGTTTTCTCTCGGTATGCGGTATAGGATGAGATTCGAAGGAGAAGAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_016 GATAAGCCAGTTTATAATTAGTGTGAACAAGTATATGATGGCGATGAAGAACGGGTTTTCTCTCGGTATGCGGTATAGGATGAGATTCGAAGGAGAAGAG 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT2G46 TCTCCTGAGAGAATATTTACAGGTACCATTATTGGCAGTGGAGATCTATCTTCTCAATGGCCAGCTTCCAAATGGAGGTCATTGCAGATCCAATGGGACG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_016 TCTCCTGAGAGAATATTTACAGGTACCATTATTGGCAGTGGAGATCTATCTTCTCAATGGCCAGCTTCCAAATGGAGGTCATTGCAGATCCAATGGGACG 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT2G46 AGCCATCTTCTATACAGAGACCAAACAAGGTCTCACCGTGGGAGATCGAGCCTTTCTCACCATCCGCGCTTACACCAACCCCTACTCAACAACAATCAAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_016 AGCCATCTTCTATACAGAGACCAAACAAGGTCTCACCGTGGGAGATCGAGCCTTTCTCACCATCCGCGCTTACACCAACCCCTACTCAACAACAATCAAA 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT2G46 GTCCAAACGGTCCAGACCAATCTCAGAAATCACAGGGAGTCCTGTAGCTTCTAGTTTCTTGAGTAGTTTCTCGCAGAGCCACGAGTCTAATCCATCGGTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_016 GTCCAAACGGTCCAGACCAATCTCAGAAATCACAGGGAGTCCTGTAGCTTCTAGTTTCTTGAGTAGTTTCTCGCAGAGCCACGAGTCTAATCCATCGGTC 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 AT2G46 AAACTGTTGTTTCAAGATCCAGCAACCGAGAGAAACTCAAACAAATCAGTGTTTTCAAGTGGATTACAATGCAAGATAACCGAGGCTCCGGTCACAAGTA :::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_016 AAACTGTTGTTTCAAGATCCAGCAACCGAGAGAAACTCAAACGAATCAGTGTTTTCAAGTGGATTACAATGCAAGATAACCGAGGCTCCGGTCACAAGTA 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 AT2G46 GTTGTAGGTTATTCGGATTCGATCTCACGAGCAAGCCTGCTTCTGCTACAATTCCTCATGACAAGCAGCTAATAAGTGTGGATTCAAATATATCTGATTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_016 GTTGTAGGTTATTCGGATTCGATCTCACGAGCAAGCCTGCTTCTGCTACAATTCCTCATGACAAGCAGCTAATAAGTGTGGATTCAAATATATCTGATTC 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 AT2G46 TACCACCAAGTGTCAAGATCCTAACTCTTCAAACTCACCAAAAGAGCAGAAACAACAAACATCCACAAGAAGCCGAATCAAGGTGCAAATGCAAGGAACA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_016 TACCACCAAGTGTCAAGATCCTAACTCTTCAAACTCACCAAAAGAGCAGAAACAACAAACATCCACAAGAAGCCGAATCAAGGTGCAAATGCAAGGAACA 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 AT2G46 GCGGTTGGACGCGCGGTTGATTTAACATTGTTGAGATCATACGATGAACTAATAAAAGAGCTAGAGAAAATGTTTGAGATTGAAGGAGAACTTAGTCCTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_016 GCGGTTGGACGCGCGGTTGATTTAACATTGTTGAGATCATACGATGAACTAATAAAAGAGCTAGAGAAAATGTTTGAGATTGAAGGAGAACTTAGTCCTA 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 1610 1620 1630 1640 1650 1660 1670 1680 1690 1700 AT2G46 AAGACAAATGGGCTATCGTGTTTACAGACGATGAAGGAGATAGGATGCTTGTAGGAGATGATCCATGGAATGAGTTCTGTAAAATGGCAAAGAAGTTATT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_016 AAGACAAATGGGCTATCGTGTTTACAGACGATGAAGGAGATAGGATGCTTGTAGGAGATGATCCATGGAATGAGTTCTGTAAAATGGCAAAGAAGTTATT 1610 1620 1630 1640 1650 1660 1670 1680 1690 1700 1710 1720 1730 1740 1750 1760 1770 1780 1790 1800 AT2G46 CATATATCCGAGTGATGAGGTCAAGAAAATGAGGTCGAAGTCGTTGTTGGGTGATAAAGGTACGATCGTAAATCTTGAATCAGATCAGAGGACAGTTCAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_016 CATATATCCGAGTGATGAGGTCAAGAAAATGAGGTCGAAGTCGTTGTTGGGTGATAAAGGTACGATCGTAAATCTTGAATCAGATCAGAGGACAGTTCAC 1710 1720 1730 1740 1750 1760 1770 1780 1790 1800 AT2G46 GTT ::: RE_016 GTT 10 20 30 40 50 60 70 80 90 100 AT2G46 MANVEADFRTSGSNDDELYTELWKACAGPLVEVPRYGERVFYFPQGHMEQLVASTNQGVVDQEIPVFNLPPKILCRVLSVTLKAEHETDEVYAQITLQPE :::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::: RE_016 MANVEADFRTSGSNDDELYTELWKACAGPLVEAPRYGERVFYFPQGHMEQLVASTNQGVVDQEIPVFNLPPKILCRVLSATLKAEHETDEVYAQITLQPE 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT2G46 EDQSEPTSLDPPLVEPAKPTVDSFVKILTASDTSTHGGFSVLRKHATECLPSLDMTQPTPTQELVARDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_016 EDQSEPTSLDPPLVEPAKPTVDSFVKILTASDTSTHGGFSVLRKHATECLPSLDMTQPTPTQELVARDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSK 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT2G46 RLVAGDAFVFLRGETGDLRVGVRRLAKQQSTMPASVISSQSMRLGVLATASHAVTTTTIFVVFYKPRISQFIISVNKYMMAMKNGFSLGMRYRMRFEGEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_016 RLVAGDAFVFLRGETGDLRVGVRRLAKQQSTMPASVISSQSMRLGVLATASHAVTTTTIFVVFYKPRISQFIISVNKYMMAMKNGFSLGMRYRMRFEGEE 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT2G46 SPERIFTGTIIGSGDLSSQWPASKWRSLQIQWDEPSSIQRPNKVSPWEIEPFSPSALTPTPTQQQSKSKRSRPISEITGSPVASSFLSSFSQSHESNPSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_016 SPERIFTGTIIGSGDLSSQWPASKWRSLQIQWDEPSSIQRPNKVSPWEIEPFSPSALTPTPTQQQSKSKRSRPISEITGSPVASSFLSSFSQSHESNPSV 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT2G46 KLLFQDPATERNSNKSVFSSGLQCKITEAPVTSSCRLFGFDLTSKPASATIPHDKQLISVDSNISDSTTKCQDPNSSNSPKEQKQQTSTRSRIKVQMQGT ::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_016 KLLFQDPATERNSNESVFSSGLQCKITEAPVTSSCRLFGFDLTSKPASATIPHDKQLISVDSNISDSTTKCQDPNSSNSPKEQKQQTSTRSRIKVQMQGT 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT2G46 AVGRAVDLTLLRSYDELIKELEKMFEIEGELSPKDKWAIVFTDDEGDRMLVGDDPWNEFCKMAKKLFIYPSDEVKKMRSKSLLGDKGTIVNLESDQRTVH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_016 AVGRAVDLTLLRSYDELIKELEKMFEIEGELSPKDKWAIVFTDDEGDRMLVGDDPWNEFCKMAKKLFIYPSDEVKKMRSKSLLGDKGTIVNLESDQRTVH 510 520 530 540 550 560 570 580 590 600 AT2G46 V : RE_016 V

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