| Code name | RE_0184 | |||
|---|---|---|---|---|
| Locus | AT3G23050 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.20%一致 | |||
| comment | 0115_アミノ酸配列70%以上一致 | |||
| sequence |
>RE_0184_729bp ATGATCGGCCAACTTATGAACCTCAAGGCCACGGAGCTCTGTCTCGGCCTCCCCGGCGGCGCTGAAGCAGTTGAGAGTCCTGCCAAATCGGCGGTGGGAA GCAAGAGAGGCTTCTCCGAAACCGTTGATCTCATGCTCAATCTTCAATCTAACAAAGAAGGCTCCGTTGATCTCAAAAACGTTTCTGCTGTTCCCAAGGA GAAGACTACCCTTAAAGATCCTTCTAAGCCTCCTGCTAAAGCACAAGTGGTGGGATGGCCACCTGTGAGGAACTACAGGAAGAACATGATGACTCAGCAG AAGACCAGTAGTGGTGCGGAGGAGGCCAGCAGTGAGAAGGCCGGGAACTTTGGTGGAGGAGCAGCCGGAGCCGGCTTGGTGAAGGTCTCCATGGACGGTG CTCCATATCTGAGGAAAGTTGACCTCAAGATGTACAAAAGCTACCAGGATCTTTCTGATGCATTGGCCAAAATGTTCAGCTCCTTTACTATGGGAAACTA TGGAGCACAAGGAATGATAGATTTCATGAACGAGAGCAAGCTAATGAATCTGGTGAATAGCTCTGAGTATGTGCCAAGCTACGAGGACAAAGATGGTGAC GGGATGCTCGTTGGCGATGTCCCATGGGAAATGTTTGTCGAGTCTTGCAAACGTTTGCGCATTATGAAGGGATCTGAAGCAGTTGGACTTGCTCCGAGAG CAATGGAGAAGTACTGCAAGAACAGATCT >RE_0184_translated MIGQLMNLKATELCLGLPGGAEAVESPAKSAVGSKRGFSETVDLMLNLQSNKEGSVDLKNVSAVPKEKTTLKDPSKPPAKAQVVGWPPVRNYRKNMMTQQ KTSSGAEEASSEKAGNFGGGAAGAGLVKVSMDGAPYLRKVDLKMYKSYQDLSDALAKMFSSFTMGNYGAQGMIDFMNESKLMNLVNSSEYVPSYEDKDGD GMLVGDVPWEMFVESCKRLRIMKGSEAVGLAPRAMEKYCKNRS |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 727/729 (99.7%)（アミノ酸配列で241/243 (99.2%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT3G23 ATGATCGGCCAACTTATGAACCTCAAGGCCACGGAGCTCTGTCTCGGCCTCCCCGGCGGCGCTGAAGCAGTTGAGAGTCCTGCCAAATCGGCGGTGGGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_018 ATGATCGGCCAACTTATGAACCTCAAGGCCACGGAGCTCTGTCTCGGCCTCCCCGGCGGCGCTGAAGCAGTTGAGAGTCCTGCCAAATCGGCGGTGGGAA
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT3G23 GCAAGAGAGGCTTCTCCGAAACCGTTGATCTCATGCTCAATCTTCAATCTAACAAAGAAGGCTCCGTTGATCTCAAAAACGTTTCTGCTGTTCCCAAGGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_018 GCAAGAGAGGCTTCTCCGAAACCGTTGATCTCATGCTCAATCTTCAATCTAACAAAGAAGGCTCCGTTGATCTCAAAAACGTTTCTGCTGTTCCCAAGGA
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT3G23 GAAGACTACCCTTAAAGATCCTTCTAAGCCTCCTGCTAAAGCACAAGTGGTGGGATGGCCACCTGTGAGGAACTACAGGAAGAACATGATGACTCAGCAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_018 GAAGACTACCCTTAAAGATCCTTCTAAGCCTCCTGCTAAAGCACAAGTGGTGGGATGGCCACCTGTGAGGAACTACAGGAAGAACATGATGACTCAGCAG
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT3G23 AAGACCAGTAGTGGTGCGGAGGAGGCCAGCAGTGAGAAGGCCGGGAACTTTGGTGGAGGAGCAGCCGGAGCCGGCTTGGTGAAGGTCTCCATGGACGGTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_018 AAGACCAGTAGTGGTGCGGAGGAGGCCAGCAGTGAGAAGGCCGGGAACTTTGGTGGAGGAGCAGCCGGAGCCGGCTTGGTGAAGGTCTCCATGGACGGTG
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT3G23 CTCCATATCTGAGGAAAGTTGACCTCAAGATGTACAAAAGCTACCAGGATCTTTCTGATGCATTGGCCAAAATGTTCAGCTCCTTTACTATGGGAAACTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_018 CTCCATATCTGAGGAAAGTTGACCTCAAGATGTACAAAAGCTACCAGGATCTTTCTGATGCATTGGCCAAAATGTTCAGCTCCTTTACTATGGGAAACTA
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT3G23 TGGAGCACAAGGAATGATAGATTTCATGAACGAGAGCAAGCTAATGAATCTGCTGAATAGCTCTGAGTATGTGCCAAGCTACGAGGACAAAGATGGTGAC
:::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
RE_018 TGGAGCACAAGGAATGATAGATTTCATGAACGAGAGCAAGCTAATGAATCTGGTGAATAGCTCTGAGTATGTGCCAAGCTACGAGGACAAAGATGGTGAC
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660 670 680 690 700
AT3G23 TGGATGCTCGTTGGCGATGTCCCATGGGAAATGTTTGTCGAGTCTTGCAAACGTTTGCGCATTATGAAGGGATCTGAAGCAGTTGGACTTGCTCCGAGAG
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_018 GGGATGCTCGTTGGCGATGTCCCATGGGAAATGTTTGTCGAGTCTTGCAAACGTTTGCGCATTATGAAGGGATCTGAAGCAGTTGGACTTGCTCCGAGAG
610 620 630 640 650 660 670 680 690 700
710 720
AT3G23 CAATGGAGAAGTACTGCAAGAACAGATCT
:::::::::::::::::::::::::::::
RE_018 CAATGGAGAAGTACTGCAAGAACAGATCT
710 720
10 20 30 40 50 60 70 80 90 100
AT3G23 MIGQLMNLKATELCLGLPGGAEAVESPAKSAVGSKRGFSETVDLMLNLQSNKEGSVDLKNVSAVPKEKTTLKDPSKPPAKAQVVGWPPVRNYRKNMMTQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_018 MIGQLMNLKATELCLGLPGGAEAVESPAKSAVGSKRGFSETVDLMLNLQSNKEGSVDLKNVSAVPKEKTTLKDPSKPPAKAQVVGWPPVRNYRKNMMTQQ
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT3G23 KTSSGAEEASSEKAGNFGGGAAGAGLVKVSMDGAPYLRKVDLKMYKSYQDLSDALAKMFSSFTMGNYGAQGMIDFMNESKLMNLLNSSEYVPSYEDKDGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::
RE_018 KTSSGAEEASSEKAGNFGGGAAGAGLVKVSMDGAPYLRKVDLKMYKSYQDLSDALAKMFSSFTMGNYGAQGMIDFMNESKLMNLVNSSEYVPSYEDKDGD
110 120 130 140 150 160 170 180 190 200
210 220 230 240
AT3G23 WMLVGDVPWEMFVESCKRLRIMKGSEAVGLAPRAMEKYCKNRS
::::::::::::::::::::::::::::::::::::::::::
RE_018 GMLVGDVPWEMFVESCKRLRIMKGSEAVGLAPRAMEKYCKNRS
210 220 230 240
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