| Code name | RE_0186 | |||
|---|---|---|---|---|
| Locus | AT4G28640 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.60%一致 | |||
| comment | 0115_アミノ酸配列70%以上一致 | |||
| sequence |
>RE_0186_738bp ATGGAAGGCGGTTCCGCTAGTGGATCGGCCTCGGCTTTGTCAAACGATGAAAATCTCGTCGTTTCTTGTGAGGATTCTTCTTCTCCTATAGGGAATGAGC TTGAGCTTGGTCTTACGTTGAGCCTTGGTCGCAAAGGGTATCGAGATTGTAGGGTTTACGCTGATGATTCTTCTTCTTCTTCATCATCTTCTTCTCTGAG CAGAGCTAGCGTAATTGCTGGGATCAAGAGGACAGCTGATTCCATGGCTGCAACTAGTGGGCAAGTTGTGGGATGGCCACCAATAAGGACTTACAGAATG AACAGTATGGTTAACCAAGCTAAGGCTTCAGCCACTGAAGATCCGAACTTGGAGATAAGTCAAGCCGTAAACAAGAATAGAAGTGATTCAACAAAGATGA GAAATTCCATGTTTGTTAAGGTGACTATGGATGGCATTCCTATTGGAAGGAAAATCGATCTGAATGCTCATAAATGCTATGAATCATTGTCAAACACTCT AGAGGAAATGTTTCTGAAACCTAAATTAGGTTCACGCACACTAGAAACCGATGGTCACATGGAAACACCGGTCAAGATACTACCAGATGGGTCTTCCGGA TTAGTACTAACGTATGAAGACAAGGAAGGAGATTGGATGCTTGTTGGCGATGTTCCGTGGGGGATGTTTATTGGTTCAGTGAGAAGGCTCCGGATAATGA AAACATCGGAGGCTACTGATAAAGCTCAGATGATATTA >RE_0186_translated MEGGSASGSASALSNDENLVVSCEDSSSPIGNELELGLTLSLGRKGYRDCRVYADDSSSSSSSSSLSRASVIAGIKRTADSMAATSGQVVGWPPIRTYRM NSMVNQAKASATEDPNLEISQAVNKNRSDSTKMRNSMFVKVTMDGIPIGRKIDLNAHKCYESLSNTLEEMFLKPKLGSRTLETDGHMETPVKILPDGSSG LVLTYEDKEGDWMLVGDVPWGMFIGSVRRLRIMKTSEATDKAQMIL |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 736/738 (99.7%)（アミノ酸配列で245/246 (99.6%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT4G28 ATGGAAGGCGGTTCCGCTAGTGGATCGGCTTCGGCTTTGTCAAACGATGAAAATCTCGTCGTTTCTTGTGAGGATTCTTCTTCTCCTATAGGGAATGAGC
::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_018 ATGGAAGGCGGTTCCGCTAGTGGATCGGCCTCGGCTTTGTCAAACGATGAAAATCTCGTCGTTTCTTGTGAGGATTCTTCTTCTCCTATAGGGAATGAGC
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT4G28 TTGAGCTTGGTCTTACGTTGAGCCTTGGTCGCAAAGGGTATCGAGATTGTAGGGTTTACGCTGATGATTCTTCTTCTTCTTCATCATCTTCTTCTCTGAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_018 TTGAGCTTGGTCTTACGTTGAGCCTTGGTCGCAAAGGGTATCGAGATTGTAGGGTTTACGCTGATGATTCTTCTTCTTCTTCATCATCTTCTTCTCTGAG
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT4G28 CAGAGCTAGCGTAATTGCTGGGATCAAGAGGACAGCTGATTCCATGGCTGCAACTAGTGGGCAAGTTGTGGGATGGCCACCAATAAGGACTTACAGAATG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_018 CAGAGCTAGCGTAATTGCTGGGATCAAGAGGACAGCTGATTCCATGGCTGCAACTAGTGGGCAAGTTGTGGGATGGCCACCAATAAGGACTTACAGAATG
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT4G28 AACAGTATGGTTAACCAAGCTAAGGCTTCAGCCACTGAAGATCCGAACTTGGAGATAAGTCAAGCCGTAAACAAGAATAGAAGTGATTCAACAAAGATGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_018 AACAGTATGGTTAACCAAGCTAAGGCTTCAGCCACTGAAGATCCGAACTTGGAGATAAGTCAAGCCGTAAACAAGAATAGAAGTGATTCAACAAAGATGA
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT4G28 GAAATTCCATGTTTGTTAAGGTGACTATGGATGGCATTCCTATTGGAAGGAAAATCGATCTGAATGCTCATAAATGCTATGAATCATTGTCAAACACTCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_018 GAAATTCCATGTTTGTTAAGGTGACTATGGATGGCATTCCTATTGGAAGGAAAATCGATCTGAATGCTCATAAATGCTATGAATCATTGTCAAACACTCT
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT4G28 AGAGGAAATGTTTCTGAAACCTAAATTAGGTTCACGCACACTAGAAACCGATGGTCACATGGAAACACCGGTCAAGATACTACCAGATGGGTCTTCCGGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_018 AGAGGAAATGTTTCTGAAACCTAAATTAGGTTCACGCACACTAGAAACCGATGGTCACATGGAAACACCGGTCAAGATACTACCAGATGGGTCTTCCGGA
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660 670 680 690 700
AT4G28 TTAGTACTAACGTATGAAGACAAGGAAGGAGATTGGATGCTTGTTGGCGATGTTCCGTGGGGGATGTTTATTGGTTCAGTGAGAAGGCTCCGGATAATGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_018 TTAGTACTAACGTATGAAGACAAGGAAGGAGATTGGATGCTTGTTGGCGATGTTCCGTGGGGGATGTTTATTGGTTCAGTGAGAAGGCTCCGGATAATGA
610 620 630 640 650 660 670 680 690 700
710 720 730
AT4G28 AAACATCGGAGGCTACTGGTAAAGCTCAGATGATATTA
:::::::::::::::::: :::::::::::::::::::
RE_018 AAACATCGGAGGCTACTGATAAAGCTCAGATGATATTA
710 720 730
10 20 30 40 50 60 70 80 90 100
AT4G28 MEGGSASGSASALSNDENLVVSCEDSSSPIGNELELGLTLSLGRKGYRDCRVYADDSSSSSSSSSLSRASVIAGIKRTADSMAATSGQVVGWPPIRTYRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_018 MEGGSASGSASALSNDENLVVSCEDSSSPIGNELELGLTLSLGRKGYRDCRVYADDSSSSSSSSSLSRASVIAGIKRTADSMAATSGQVVGWPPIRTYRM
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT4G28 NSMVNQAKASATEDPNLEISQAVNKNRSDSTKMRNSMFVKVTMDGIPIGRKIDLNAHKCYESLSNTLEEMFLKPKLGSRTLETDGHMETPVKILPDGSSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_018 NSMVNQAKASATEDPNLEISQAVNKNRSDSTKMRNSMFVKVTMDGIPIGRKIDLNAHKCYESLSNTLEEMFLKPKLGSRTLETDGHMETPVKILPDGSSG
110 120 130 140 150 160 170 180 190 200
210 220 230 240
AT4G28 LVLTYEDKEGDWMLVGDVPWGMFIGSVRRLRIMKTSEATGKAQMIL
::::::::::::::::::::::::::::::::::::::: ::::::
RE_018 LVLTYEDKEGDWMLVGDVPWGMFIGSVRRLRIMKTSEATDKAQMIL
210 220 230 240
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