| Code name | RE_0198 | |||
|---|---|---|---|---|
| Locus | AT1G10120 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列82.20%一致 | |||
| comment | 0520_20080115_0198_FR_55 | |||
| sequence |
>RE_0198_903bp ATGGCGATGGATAATCCAGGGATGAGTTGCTTCTCTCATTACCAACCCGGTTCTGTTTCCGGTTTTGCAGCAGACATGCCTGCTAGTCTTCTTCCGTTTG GTGATTGTGGTGGTGGTCAAATTGGTCATTTTCTTGGTTCAGACAAGAAAGGGGAAAGATTGATCAGAGCTGGAGAATCATCTCATGAGGATCATCATCA GGTTTCAGATGATGCTGTTCTTGGTGCTTCCCCAGTTGGGAAAAGAAGGCTACCTGAAGCCGAATCACAATGGAACAAGAAAGCTGTGGAGGAATTTCAA GAAGACCCTCAAAGGGGAAATGATCAGAGCCAGAAGAAGCATAAAAATGATCAGAGTAAAGAGACGGTGAACAAGGAGAGCTCACAAAGTGAAGAAGCAC CGAAAGAAAACTACATTCATATGAGGGCAAGAAGAGGTCAAGCCACTAATAGTCACAGTCTTGCAGAGCGGGTTAGAAGAGAAAAGATCAGTGAAAGGAT GAGATTGCTTCAAGAACTTGTTCCCGGATGCAACAAGATCACCGGAAAAGCGGTTATGCTCGATGAAATAATCAACTATGTTCAGTCATTGCAACAGCAA GTTGAGTTTTTGTCTATGAAACTTGCGACGGTGAATCCAGAGATCAATATTGATATAGACAGGATTCTCGCCAAAGATCTTCTGCAGTCAAGAGACAGAA ACACTCCTACACTCGGGCTGAATCCTTTTGCCGGTTTTCAAGGGAACATACCAAACCTTTCTGCCACCACAAATCCACAATACAACCCACTACCTCAGAC AACACTAGAGAGTGAACTACAAAACCTTTACCAGATGGGATTCGTCTCAAATCCATCGACTATGTCCAGTTTCTCACCTAATGGTCGATTGAAACCTGAG CTC >RE_0198_translated MAMDNPGMSCFSHYQPGSVSGFAADMPASLLPFGDCGGGQIGHFLGSDKKGERLIRAGESSHEDHHQVSDDAVLGASPVGKRRLPEAESQWNKKAVEEFQ EDPQRGNDQSQKKHKNDQSKETVNKESSQSEEAPKENYIHMRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQ VEFLSMKLATVNPEINIDIDRILAKDLLQSRDRNTPTLGLNPFAGFQGNIPNLSATTNPQYNPLPQTTLESELQNLYQMGFVSNPSTMSSFSPNGRLKPE L |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 903/1098 (82.2%)（アミノ酸配列で301/366 (82.2%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT1G10 ATGGGTGGTGAGAGTAATGAAGGAGGAGAGATGGGCTTTAAGCATGGAGATGATGAGAGTGGTGGGATCTCTAGAGTTGGAATTACATCAATGCCCTTGT
RE_019 ----------------------------------------------------------------------------------------------------
110 120 130 140 150 160 170 180 190 200
AT1G10 ATGCAAAGGCAGATCCTTTCTTCTCTTCTGCAGATTGGGATCCAGTTGTCAATGCTGCTGCTGCTGGCTTCTCCAGCTCTCATTACCATCCTTCCATGGC
:::::
RE_019 -----------------------------------------------------------------------------------------------ATGGC
210 220 230 240 250 260 270 280 290 300
AT1G10 GATGGATAATCCAGGGATGAGTTGCTTCTCTCATTACCAACCCGGTTCTGTTTCCGGTTTTGCAGCAGACATGCCTGCTAGTCTTCTTCCGTTTGGTGAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_019 GATGGATAATCCAGGGATGAGTTGCTTCTCTCATTACCAACCCGGTTCTGTTTCCGGTTTTGCAGCAGACATGCCTGCTAGTCTTCTTCCGTTTGGTGAT
10 20 30 40 50 60 70 80 90 100
310 320 330 340 350 360 370 380 390 400
AT1G10 TGTGGTGGTGGTCAAATTGGTCATTTTCTTGGTTCAGACAAGAAAGGGGAAAGATTGATCAGAGCTGGAGAATCATCTCATGAGGATCATCATCAGGTTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_019 TGTGGTGGTGGTCAAATTGGTCATTTTCTTGGTTCAGACAAGAAAGGGGAAAGATTGATCAGAGCTGGAGAATCATCTCATGAGGATCATCATCAGGTTT
110 120 130 140 150 160 170 180 190 200
410 420 430 440 450 460 470 480 490 500
AT1G10 CAGATGATGCTGTTCTTGGTGCTTCCCCAGTTGGGAAAAGAAGGCTACCTGAAGCCGAATCACAATGGAACAAGAAAGCTGTGGAGGAATTTCAAGAAGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_019 CAGATGATGCTGTTCTTGGTGCTTCCCCAGTTGGGAAAAGAAGGCTACCTGAAGCCGAATCACAATGGAACAAGAAAGCTGTGGAGGAATTTCAAGAAGA
210 220 230 240 250 260 270 280 290 300
510 520 530 540 550 560 570 580 590 600
AT1G10 CCCTCAAAGGGGAAATGATCAGAGCCAGAAGAAGCATAAAAATGATCAGAGTAAAGAGACGGTGAACAAGGAGAGCTCACAAAGTGAAGAAGCACCGAAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_019 CCCTCAAAGGGGAAATGATCAGAGCCAGAAGAAGCATAAAAATGATCAGAGTAAAGAGACGGTGAACAAGGAGAGCTCACAAAGTGAAGAAGCACCGAAA
310 320 330 340 350 360 370 380 390 400
610 620 630 640 650 660 670 680 690 700
AT1G10 GAAAACTACATTCATATGAGGGCAAGAAGAGGTCAAGCCACTAATAGTCACAGTCTTGCAGAGCGGGTTAGAAGAGAAAAGATCAGTGAAAGGATGAGAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_019 GAAAACTACATTCATATGAGGGCAAGAAGAGGTCAAGCCACTAATAGTCACAGTCTTGCAGAGCGGGTTAGAAGAGAAAAGATCAGTGAAAGGATGAGAT
410 420 430 440 450 460 470 480 490 500
710 720 730 740 750 760 770 780 790 800
AT1G10 TGCTTCAAGAACTTGTTCCCGGATGCAACAAGATCACCGGAAAAGCGGTTATGCTCGATGAAATAATCAACTATGTTCAGTCATTGCAACAGCAAGTTGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_019 TGCTTCAAGAACTTGTTCCCGGATGCAACAAGATCACCGGAAAAGCGGTTATGCTCGATGAAATAATCAACTATGTTCAGTCATTGCAACAGCAAGTTGA
510 520 530 540 550 560 570 580 590 600
810 820 830 840 850 860 870 880 890 900
AT1G10 GTTTTTGTCTATGAAACTTGCGACGGTGAATCCAGAGATCAATATTGATATAGACAGGATTCTCGCCAAAGATCTTCTGCAGTCAAGAGACAGAAACACT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_019 GTTTTTGTCTATGAAACTTGCGACGGTGAATCCAGAGATCAATATTGATATAGACAGGATTCTCGCCAAAGATCTTCTGCAGTCAAGAGACAGAAACACT
610 620 630 640 650 660 670 680 690 700
910 920 930 940 950 960 970 980 990 1000
AT1G10 CCTACACTCGGGCTGAATCCTTTTGCCGGTTTTCAAGGGAACATACCAAACCTTTCTGCCACCACAAATCCACAATACAACCCACTACCTCAGACAACAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_019 CCTACACTCGGGCTGAATCCTTTTGCCGGTTTTCAAGGGAACATACCAAACCTTTCTGCCACCACAAATCCACAATACAACCCACTACCTCAGACAACAC
710 720 730 740 750 760 770 780 790 800
1010 1020 1030 1040 1050 1060 1070 1080 1090
AT1G10 TAGAGAGTGAACTACAAAACCTTTACCAGATGGGATTCGTCTCAAATCCATCGACTATGTCCAGTTTCTCACCTAATGGTCGATTGAAACCTGAGCTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_019 TAGAGAGTGAACTACAAAACCTTTACCAGATGGGATTCGTCTCAAATCCATCGACTATGTCCAGTTTCTCACCTAATGGTCGATTGAAACCTGAGCTC
810 820 830 840 850 860 870 880 890 900
10 20 30 40 50 60 70 80 90 100
AT1G10 MGGESNEGGEMGFKHGDDESGGISRVGITSMPLYAKADPFFSSADWDPVVNAAAAGFSSSHYHPSMAMDNPGMSCFSHYQPGSVSGFAADMPASLLPFGD
:::::::::::::::::::::::::::::::::::
RE_019 -----------------------------------------------------------------MAMDNPGMSCFSHYQPGSVSGFAADMPASLLPFGD
10 20 30
110 120 130 140 150 160 170 180 190 200
AT1G10 CGGGQIGHFLGSDKKGERLIRAGESSHEDHHQVSDDAVLGASPVGKRRLPEAESQWNKKAVEEFQEDPQRGNDQSQKKHKNDQSKETVNKESSQSEEAPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_019 CGGGQIGHFLGSDKKGERLIRAGESSHEDHHQVSDDAVLGASPVGKRRLPEAESQWNKKAVEEFQEDPQRGNDQSQKKHKNDQSKETVNKESSQSEEAPK
40 50 60 70 80 90 100 110 120 130
210 220 230 240 250 260 270 280 290 300
AT1G10 ENYIHMRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPEINIDIDRILAKDLLQSRDRNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_019 ENYIHMRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPEINIDIDRILAKDLLQSRDRNT
140 150 160 170 180 190 200 210 220 230
310 320 330 340 350 360
AT1G10 PTLGLNPFAGFQGNIPNLSATTNPQYNPLPQTTLESELQNLYQMGFVSNPSTMSSFSPNGRLKPEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_019 PTLGLNPFAGFQGNIPNLSATTNPQYNPLPQTTLESELQNLYQMGFVSNPSTMSSFSPNGRLKPEL
240 250 260 270 280 290 300
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