◆◆◆RE_01A12 detail◆◆◆

Code name	RE_01A12
Locus	AT2G20880
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列100%一致
comment
sequence	>RE_01A12_1008bp ATGGCTACTGCTAAGAACAAGGGAAAATCAATCAGGGTCCTTGGTACCAGTGAAGCAGAGAAAAAGGATGAGATGGAGTTGGAGGAGGAGTTTCAGTTTA GTAGCGGCAAGTATAAAGATTCGGGTCCTGGCTCGGACATGTGGTTAGGAGATGCTTCCTCTACGTCTCCAAGAAGTCTTAGGAAGACTAGAACCTTTGA CCGACATAATCCCTATCTCGTATCTTCTTATGCTACTCCTCAGCCGCCAACAACAACTACATGCTCTGTCTCTTTTCCCTTTTACCTCCCTCCAGCGATT CAAAATCAACAACGATTTTTACACCCGAATGACCCTTCAGGACAAAGACAGCAACAAATGATCTCGTTTGATCCTCAACAACAGGTGCAACCATATGTTG CACAACAGCAGCAACAACAACAACATCTATTGCAGTACTGGAGAGACATTCTGAAGCTGAGTCCGAGCGGAAGAATGATGATGATGAACATGTTAAGACA AGAAAGCGATCTGCCACTGACGAGGCCACCGGTTCAACCCTTCAGCGCCACCAAGCTATATAGAGGTGTCAGGCAACGCCACTGGGGAAAATGGGTTGCC GAGATCCGTAAGCCACGAAACAGGACACGTCTCTGGCTAGGGACATTCGATACAGCAGAAGAAGCCGCCATGGCCTACGACCGCGAGGCCTTCAAGTTGA GGGGAGAGACCGCTAGGCTCAATTTCCCTGAACTTTTTCTCAATAAACAAGAGCCAACTCCCGTGCATCAGAAACAATGTGAGACGGGGACTACTAGTGA AGACTCAAGCAGAAGAGGAGAGGATGATTCGAGCACGGCATTGGCAGTAGGAGGGGTGAGTGAGGAGACGGGTTGGGCTGAGGCATGGTTCAATGCAATT CCAGAGGAATGGGGACCTGGAAGCCCTCTATGGGATGATTACCACTTTCCCATTTCTAACCATAAGGACGATCTTGACGCCACACAAAACTCTTCTTCTG ATACAATT >RE_01A12_translated MATAKNKGKSIRVLGTSEAEKKDEMELEEEFQFSSGKYKDSGPGSDMWLGDASSTSPRSLRKTRTFDRHNPYLVSSYATPQPPTTTTCSVSFPFYLPPAI QNQQRFLHPNDPSGQRQQQMISFDPQQQVQPYVAQQQQQQQHLLQYWRDILKLSPSGRMMMMNMLRQESDLPLTRPPVQPFSATKLYRGVRQRHWGKWVA EIRKPRNRTRLWLGTFDTAEEAAMAYDREAFKLRGETARLNFPELFLNKQEPTPVHQKQCETGTTSEDSSRRGEDDSSTALAVGGVSEETGWAEAWFNAI PEEWGPGSPLWDDYHFPISNHKDDLDATQNSSSDTI
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1007/1008 (99.9%)（アミノ酸配列で100%）一致しました。 10 20 30 40 50 60 70 80 90 100 AT2G20 ATGGCTACTGCTAAGAACAAGGGAAAATCAATCAGGGTCCTTGGTACCAGTGAAGCAGAGAAAAAGGATGAGATGGAGTTGGAGGAGGAGTTCCAGTTTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::: RE_01A ATGGCTACTGCTAAGAACAAGGGAAAATCAATCAGGGTCCTTGGTACCAGTGAAGCAGAGAAAAAGGATGAGATGGAGTTGGAGGAGGAGTTTCAGTTTA 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT2G20 GTAGCGGCAAGTATAAAGATTCGGGTCCTGGCTCGGACATGTGGTTAGGAGATGCTTCCTCTACGTCTCCAAGAAGTCTTAGGAAGACTAGAACCTTTGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_01A GTAGCGGCAAGTATAAAGATTCGGGTCCTGGCTCGGACATGTGGTTAGGAGATGCTTCCTCTACGTCTCCAAGAAGTCTTAGGAAGACTAGAACCTTTGA 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT2G20 CCGACATAATCCCTATCTCGTATCTTCTTATGCTACTCCTCAGCCGCCAACAACAACTACATGCTCTGTCTCTTTTCCCTTTTACCTCCCTCCAGCGATT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_01A CCGACATAATCCCTATCTCGTATCTTCTTATGCTACTCCTCAGCCGCCAACAACAACTACATGCTCTGTCTCTTTTCCCTTTTACCTCCCTCCAGCGATT 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT2G20 CAAAATCAACAACGATTTTTACACCCGAATGACCCTTCAGGACAAAGACAGCAACAAATGATCTCGTTTGATCCTCAACAACAGGTGCAACCATATGTTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_01A CAAAATCAACAACGATTTTTACACCCGAATGACCCTTCAGGACAAAGACAGCAACAAATGATCTCGTTTGATCCTCAACAACAGGTGCAACCATATGTTG 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT2G20 CACAACAGCAGCAACAACAACAACATCTATTGCAGTACTGGAGAGACATTCTGAAGCTGAGTCCGAGCGGAAGAATGATGATGATGAACATGTTAAGACA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_01A CACAACAGCAGCAACAACAACAACATCTATTGCAGTACTGGAGAGACATTCTGAAGCTGAGTCCGAGCGGAAGAATGATGATGATGAACATGTTAAGACA 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT2G20 AGAAAGCGATCTGCCACTGACGAGGCCACCGGTTCAACCCTTCAGCGCCACCAAGCTATATAGAGGTGTCAGGCAACGCCACTGGGGAAAATGGGTTGCC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_01A AGAAAGCGATCTGCCACTGACGAGGCCACCGGTTCAACCCTTCAGCGCCACCAAGCTATATAGAGGTGTCAGGCAACGCCACTGGGGAAAATGGGTTGCC 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT2G20 GAGATCCGTAAGCCACGAAACAGGACACGTCTCTGGCTAGGGACATTCGATACAGCAGAAGAAGCCGCCATGGCCTACGACCGCGAGGCCTTCAAGTTGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_01A GAGATCCGTAAGCCACGAAACAGGACACGTCTCTGGCTAGGGACATTCGATACAGCAGAAGAAGCCGCCATGGCCTACGACCGCGAGGCCTTCAAGTTGA 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT2G20 GGGGAGAGACCGCTAGGCTCAATTTCCCTGAACTTTTTCTCAATAAACAAGAGCCAACTCCCGTGCATCAGAAACAATGTGAGACGGGGACTACTAGTGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_01A GGGGAGAGACCGCTAGGCTCAATTTCCCTGAACTTTTTCTCAATAAACAAGAGCCAACTCCCGTGCATCAGAAACAATGTGAGACGGGGACTACTAGTGA 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT2G20 AGACTCAAGCAGAAGAGGAGAGGATGATTCGAGCACGGCATTGGCAGTAGGAGGGGTGAGTGAGGAGACGGGTTGGGCTGAGGCATGGTTCAATGCAATT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_01A AGACTCAAGCAGAAGAGGAGAGGATGATTCGAGCACGGCATTGGCAGTAGGAGGGGTGAGTGAGGAGACGGGTTGGGCTGAGGCATGGTTCAATGCAATT 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT2G20 CCAGAGGAATGGGGACCTGGAAGCCCTCTATGGGATGATTACCACTTTCCCATTTCTAACCATAAGGACGATCTTGACGCCACACAAAACTCTTCTTCTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_01A CCAGAGGAATGGGGACCTGGAAGCCCTCTATGGGATGATTACCACTTTCCCATTTCTAACCATAAGGACGATCTTGACGCCACACAAAACTCTTCTTCTG 910 920 930 940 950 960 970 980 990 1000 AT2G20 ATACAATT :::::::: RE_01A ATACAATT 10 20 30 40 50 60 70 80 90 100 AT2G20 MATAKNKGKSIRVLGTSEAEKKDEMELEEEFQFSSGKYKDSGPGSDMWLGDASSTSPRSLRKTRTFDRHNPYLVSSYATPQPPTTTTCSVSFPFYLPPAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_01A MATAKNKGKSIRVLGTSEAEKKDEMELEEEFQFSSGKYKDSGPGSDMWLGDASSTSPRSLRKTRTFDRHNPYLVSSYATPQPPTTTTCSVSFPFYLPPAI 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT2G20 QNQQRFLHPNDPSGQRQQQMISFDPQQQVQPYVAQQQQQQQHLLQYWRDILKLSPSGRMMMMNMLRQESDLPLTRPPVQPFSATKLYRGVRQRHWGKWVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_01A QNQQRFLHPNDPSGQRQQQMISFDPQQQVQPYVAQQQQQQQHLLQYWRDILKLSPSGRMMMMNMLRQESDLPLTRPPVQPFSATKLYRGVRQRHWGKWVA 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT2G20 EIRKPRNRTRLWLGTFDTAEEAAMAYDREAFKLRGETARLNFPELFLNKQEPTPVHQKQCETGTTSEDSSRRGEDDSSTALAVGGVSEETGWAEAWFNAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_01A EIRKPRNRTRLWLGTFDTAEEAAMAYDREAFKLRGETARLNFPELFLNKQEPTPVHQKQCETGTTSEDSSRRGEDDSSTALAVGGVSEETGWAEAWFNAI 210 220 230 240 250 260 270 280 290 300 310 320 330 AT2G20 PEEWGPGSPLWDDYHFPISNHKDDLDATQNSSSDTI :::::::::::::::::::::::::::::::::::: RE_01A PEEWGPGSPLWDDYHFPISNHKDDLDATQNSSSDTI 310 320 330

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