| Code name | RE_01C09 | |||
|---|---|---|---|---|
| Locus | AT1G04550 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | ã¢ããé ¸é å4.90%ä¸è´ | |||
| comment | ‹tŒü‚« | |||
| sequence |
>RE_01C09_717bp AACAGGGTTGTTTCTTTGTCTATCCTTCTGCTCTTGACGTCTTGGAGCTAGTCCACTAGCTTCTGAGGTTCCCATGATCCGAAGCCTTTTCACCGAGTTG ATAAACATTCTCCATGGAACATCTCCAACAAGCATCCAATCCCCTTCCTTATCTTCATAAGTGAGTACAAAGTCTGATGATCCATCTAAAAGCCTTAAAG GTTTAACCTTTTCTCGACAAGTAGTACCTGTCATTCCAAAGAACATTTCCTCAAGCGTCTGAGCCAAGTTTTCGTAAGACGAATGAGCTCTCATATCCAC TTTTCTGCCTATACCAACTCCATCCATATTCACCTTAACAAACCCTAAGCCCTGAACTTTCGGATTCACCTTCATTGACACATCTTTGAGCTCATCATTC TTCACAACTTTCTTCTCCCCGTCTCCTTCTTCCGCTCTTGCTGCCTTCATAGCTTGGTTATTAACCAAACTGTTCATCCTGTGTAACCCAATCGGTGGCC ATCCTACCACTTGACTTGAACGAGGAGGAGAAGCTCCTTGGTGAGAGGAAGATTCAGCAGAGCGTTTAGACCCAACGGAAGGAAAATCCTTAGCAGTAAG AATCCTCCCACGCTCTTTCCACGCGCCACCACCGAGGCTGAGCCCTAATCCCAATTCCAGCTCACTCTCCGCCGGAAGATTACTCTTCCCCACCTCCAAT TCTGACACACCACGCAT >RE_01C09_translated NRVVSLSILLLLTSWS*STSF*GSHDPKPFHRVDKHSPWNISNKHPIPFLIFISEYKV**SI*KP*RFNLFSTSSTCHSKEHFLKRLSQVFVRRMSSHIH FSAYTNSIHIHLNKP*ALNFRIHLH*HIFELIILHNFLLPVSFFRSCCLHSLVINQTVHPV*PNRWPSYHLT*TRRRSSLVRGRFSRAFRPNGRKILSSK NPPTLFPRATTEAEP*SQFQLTLRRKITLPHLQF*HTTH |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 285/863 (33.0%)（アミノ酸配列で13/370 ( 3.5%)）一致しました。
10 20 30 40 50 60
AT1G04 ---------------------ATGC--GTGGTGT----GTCAGAATTGGAGGTGGGGAAGAGT----AATCTTCCGGCGGAGAGTGAGCTGGAATTGGGA
:: : :: : : ::: :::::: : ::: : :::: :::: :: :
RE_01C AACAGGGTTGTTTCTTTGTCTATCCTTCTGCTCTTGACGTC----TTGGAGCT-------AGTCCACTAGCTTC----------TGAG-----GTTCCCA
10 20 30 40 50 60 70
70 80 90 100 110 120 130 140
AT1G04 TTAGGGCTC---AGCCT-----CGGTGGTGGCGCGTGGAAAGAGCGTGGGAGGATTCT------TACTGCT-----AAGGAT----TTTCCTTCCGT---
: : :: ::::: : :: :: :: : : ::::: :: :: ::: :: : :::::: :
RE_01C T----GATCCGAAGCCTTTTCAC--------CGAGTTGATA---------AACATTCTCCATGGAACATCTCCAACAAGCATCCAATCCCCTTCCTTATC
80 90 100 110 120 130 140 150
150 160 170 180 190
AT1G04 --------TGGG-------------------TCTAAACGCTCT-----GCTGAATCTT----------------CCTCTCA--CCAAGGAGCTTCTCCTC
:: : :::::: :: :: : : :: ::: ::: ::: :::: :: : : :::::
RE_01C TTCATAAGTGAGTACAAAGTCTGATGATCCATCTAAAAGC-CTTAAAGGTTTAACCTTTTCTCGACAAGTAGTACCTGTCATTCCAAAGAACATTTCCTC
160 170 180 190 200 210 220 230 240 250
200 210 220
AT1G04 -CTCGTTCAAGTCAAG---TGGTAGGATG-------------------------GCC---ACCAA-----------------------------------
::: :: :::: : ::: :: : ::: :::::
RE_01C AAGCGTCTGAGCCAAGTTTTCGTAAGACGAATGAGCTCTCATATCCACTTTTCTGCCTATACCAACTCCATCCATATTCACCTTAACAAACCCTAAGCCC
260 270 280 290 300 310 320 330 340 350
230 240
AT1G04 ------TTGGG------------TTACACA----GGATG---------------AAC------------------------------------------A
:: :: : ::::: :: : ::: :
RE_01C TGAACTTTCGGATTCACCTTCATTGACACATCTTTGA-GCTCATCATTCTTCACAACTTTCTTCTCCCCGTCTCCTTCTTCCGCTCTTGCTGCCTTCATA
360 370 380 390 400 410 420 430 440 450
250 260 270 280 290 300
AT1G04 GTTTGGTTAATAACCAAGCTATGAAGGCAG-------CAA--------------------------GAGCGGAAGAAGGAGA-------CGGGGAGAAGA
: ::::::: ::::::: :: : : : : ::: :: :: :: :::::: :: :::: ::
RE_01C GCTTGGTTATTAACCAAACTGTTCATCCTGTGTAACCCAATCGGTGGCCATCCTACCACTTGACTTGAACG--AGGAGGAGAAGCTCCTTGGTGAGAGGA
460 470 480 490 500 510 520 530 540
310 320 330 340 350 360 370 380 390 400
AT1G04 AAGTTGTGAAGAATGATGAG-CTCAAAGATGTGTCAATGAAGGTGAATCCGAAAGTTCAGGGCTTAGGGTTTGTTAAGGTGAATATGGATGGAGTTGGTA
: :: : ::: : : :: : ::: : ::::: :::: ::::
RE_01C AGATTCAGCAGAGCGTTTAGACCCAACG----------GAAGGAAAATC-------------CTTA----------------------------------
550 560 570 580 590
410 420 430 440 450 460 470
AT1G04 TAGGCAGAAAAGTGGATATGAGA----------GCTCATT-----CGTCTTA----CGAAAACTTGGCTCAGACGCTTGAGGAAAT----------GTTC
:::: : ::: :::: :: :: : : ::: :::: :: : :: ::: : ::
RE_01C ---GCAG-----------TAAGAATCCTCCCACGCTCTTTCCACGCGCC--ACCACCGA------GGCTGAG-CCCT------AATCCCAATTCCAGCTC
600 610 620 630 640 650 660
480 490 500 510
AT1G04 TTT-------GGAATGACAGGTCTGTACTGTT------TTCAAATGCGTACACTA--------
: :::: :: :::: :: :: ::: : :::: :
RE_01C ACTCTCCGCCGGAA-GA-------TTACTCTTCCCCACCTCCAATTCTGACAC-ACCACGCAT
670 680 690 700 710
AT1G04 ----------------------------------------------------------------------------------------------------
RE_01C NRVVSLSILLLLTSWS*STSF*GSHDPKPFHRVDKHSPWNISNKHPIPFLIFISEYKV**SI*KP*RFNLFSTSSTCHSKEHFLKRLSQVFVRRMSSHIH
10 20 30 40 50 60 70 80 90 100
10 20
AT1G04 -------------------------------------------------------------------------MRGVSELEVGKSNLPAESELELGLGLS
: : : :. .
RE_01C FSAYTNSIHIHLNKP*ALNFRIHLH*HIFELIILHNFLLPVSFFRSCCLHSLVINQTVHPV*PNRWPSYHLT*TRRRSSLVRGRFS--------------
110 120 130 140 150 160 170 180
30 40 50 60 70 80 90 100
AT1G04 LGGGAWKERGR-ILTAKDFPSVGSKRSAES-----------------------SSHQGASPPRSSQVVGWPPIGLHRMNSLVNNQAMKAARAEEGDGEKK
:.. :: ::..:. :.. . . :. ..:
RE_01C ---RAFRPNGRKILSSKNPPTLFPRATTEAEP*SQFQLTLRRKITLPHLQF*HTTH--------------------------------------------
190 200 210 220 230
110 120 130 140 150 160 170
AT1G04 VVKNDELKDVSMKVNPKVQGLGFVKVNMDGVGIGRKVDMRAHSSYENLAQTLEEMFFGMTGLYCFQMRTL
RE_01C ----------------------------------------------------------------------
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