Code name | RE_01D10 | |||
---|---|---|---|---|
Locus | AT3G47640 | |||
Forward primer | ||||
Reverse primer | ||||
Alignment with TAIR7CDS | アミノ酸配列100%一致 | |||
comment | ||||
sequence |
>RE_01D10_720bp ATGGTATCGAAAACTCCTTCTACATCGTCTGATGAAGCAAATGCTACTGCAGATGAAAGATGTAGAAAAGGTAAAGTACCGAAAAGGATCAACAAGGCCG TTCGTGAGAGGCTTAAGCGTGAGCATTTGAATGAGCTTTTCATTGAATTAGCCGATACTCTTGAACTGAATCAACAGAACAGTGGGAAAGCCTCTATACT ATGCGAAGCTACTCGATTCTTGAAGGACGTGTTTGGTCAAATTGAGTCTCTTAGAAAGGAGCATGCTTCTCTCCTATCTGAATCTAGCTATGTAACCACA GAGAAGAATGAGCTCAAGGAAGAAACATCAGTGCTTGAGACTGAGATTTCGAAACTACAAAACGAGATTGAAGCTAGAGCGAATCAGTCGAAACCTGACT TGAACACCTCTCCTGCACCCGAGTACCATCATCATCATTATCAACAACAACATCCTGAACGTGTATCTCAGTTCCCAGGACTTCCCATTTTCCAAGGCCC CGGCTTTCAACAATCTGCTACAACTCTTCATCCTCCTGCAACAGTTCTTGTCCTTCCAATACAACCTGATCCCCAGACACAAGATATCTCAGAAATGACT CAAGCGCAGCAGCCTTTGATGTTTAATAGCTCAAATGTGAGTAAGCCATGTCCAAGGTATGCTAGCGCGGCTGACTCGTGGTCTTCTCGGCTACTTGGAG AGCGGCTGAAAGCCAGTGAA >RE_01D10_translated MVSKTPSTSSDEANATADERCRKGKVPKRINKAVRERLKREHLNELFIELADTLELNQQNSGKASILCEATRFLKDVFGQIESLRKEHASLLSESSYVTT EKNELKEETSVLETEISKLQNEIEARANQSKPDLNTSPAPEYHHHHYQQQHPERVSQFPGLPIFQGPGFQQSATTLHPPATVLVLPIQPDPQTQDISEMT QAQQPLMFNSSNVSKPCPRYASAADSWSSRLLGERLKASE |
|||
Alignment |
◆CDS(TAIRver.9)_without_stop_codonとのalignment◆ 719/720 (99.9%)(アミノ酸配列で100%)一致しました。 10 20 30 40 50 60 70 80 90 100 AT3G47 ATGGTATCGAAAACTCCTTCTACATCGTCTGATGAAGCAAATGCTACTGCAGATGAAAGATGTAGAAAAGGTAAAGTACCGAAAAGGATCAACAAGGCCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_01D ATGGTATCGAAAACTCCTTCTACATCGTCTGATGAAGCAAATGCTACTGCAGATGAAAGATGTAGAAAAGGTAAAGTACCGAAAAGGATCAACAAGGCCG 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT3G47 TTCGTGAGAGGCTTAAGCGTGAGCATTTGAATGAGCTTTTCATTGAATTAGCCGATACTCTTGAACTGAATCAACAGAACAGTGGGAAAGCTTCTATACT ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::: RE_01D TTCGTGAGAGGCTTAAGCGTGAGCATTTGAATGAGCTTTTCATTGAATTAGCCGATACTCTTGAACTGAATCAACAGAACAGTGGGAAAGCCTCTATACT 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT3G47 ATGCGAAGCTACTCGATTCTTGAAGGACGTGTTTGGTCAAATTGAGTCTCTTAGAAAGGAGCATGCTTCTCTCCTATCTGAATCTAGCTATGTAACCACA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_01D ATGCGAAGCTACTCGATTCTTGAAGGACGTGTTTGGTCAAATTGAGTCTCTTAGAAAGGAGCATGCTTCTCTCCTATCTGAATCTAGCTATGTAACCACA 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT3G47 GAGAAGAATGAGCTCAAGGAAGAAACATCAGTGCTTGAGACTGAGATTTCGAAACTACAAAACGAGATTGAAGCTAGAGCGAATCAGTCGAAACCTGACT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_01D GAGAAGAATGAGCTCAAGGAAGAAACATCAGTGCTTGAGACTGAGATTTCGAAACTACAAAACGAGATTGAAGCTAGAGCGAATCAGTCGAAACCTGACT 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT3G47 TGAACACCTCTCCTGCACCCGAGTACCATCATCATCATTATCAACAACAACATCCTGAACGTGTATCTCAGTTCCCAGGACTTCCCATTTTCCAAGGCCC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_01D TGAACACCTCTCCTGCACCCGAGTACCATCATCATCATTATCAACAACAACATCCTGAACGTGTATCTCAGTTCCCAGGACTTCCCATTTTCCAAGGCCC 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT3G47 CGGCTTTCAACAATCTGCTACAACTCTTCATCCTCCTGCAACAGTTCTTGTCCTTCCAATACAACCTGATCCCCAGACACAAGATATCTCAGAAATGACT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_01D CGGCTTTCAACAATCTGCTACAACTCTTCATCCTCCTGCAACAGTTCTTGTCCTTCCAATACAACCTGATCCCCAGACACAAGATATCTCAGAAATGACT 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT3G47 CAAGCGCAGCAGCCTTTGATGTTTAATAGCTCAAATGTGAGTAAGCCATGTCCAAGGTATGCTAGCGCGGCTGACTCGTGGTCTTCTCGGCTACTTGGAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_01D CAAGCGCAGCAGCCTTTGATGTTTAATAGCTCAAATGTGAGTAAGCCATGTCCAAGGTATGCTAGCGCGGCTGACTCGTGGTCTTCTCGGCTACTTGGAG 610 620 630 640 650 660 670 680 690 700 710 720 AT3G47 AGCGGCTGAAAGCCAGTGAA :::::::::::::::::::: RE_01D AGCGGCTGAAAGCCAGTGAA 710 720 10 20 30 40 50 60 70 80 90 100 AT3G47 MVSKTPSTSSDEANATADERCRKGKVPKRINKAVRERLKREHLNELFIELADTLELNQQNSGKASILCEATRFLKDVFGQIESLRKEHASLLSESSYVTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_01D MVSKTPSTSSDEANATADERCRKGKVPKRINKAVRERLKREHLNELFIELADTLELNQQNSGKASILCEATRFLKDVFGQIESLRKEHASLLSESSYVTT 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT3G47 EKNELKEETSVLETEISKLQNEIEARANQSKPDLNTSPAPEYHHHHYQQQHPERVSQFPGLPIFQGPGFQQSATTLHPPATVLVLPIQPDPQTQDISEMT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_01D EKNELKEETSVLETEISKLQNEIEARANQSKPDLNTSPAPEYHHHHYQQQHPERVSQFPGLPIFQGPGFQQSATTLHPPATVLVLPIQPDPQTQDISEMT 110 120 130 140 150 160 170 180 190 200 210 220 230 240 AT3G47 QAQQPLMFNSSNVSKPCPRYASAADSWSSRLLGERLKASE :::::::::::::::::::::::::::::::::::::::: RE_01D QAQQPLMFNSSNVSKPCPRYASAADSWSSRLLGERLKASE 210 220 230 240 |