◆◆◆RE_01D11 detail◆◆◆

Code name	RE_01D11
Locus	AT4G01460
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列100%一致
comment
sequence	>RE_01D11_945bp ATGAGTGGATTGATGAGTTTTGGTGAATTAGAAGACCAATTTGGTCAGATTTCAGACACTACTATGGAAGAGAAGATACCGTTTCTGCAAATGCTTCAAT GCATAGAACACCCTTTTACAACAACAGAACCAAATCAGTTTCTCCAATCACTTCTCCAGATCCAAACCCTAGAATCAAAGAGCTGTCTCACCCTTGAAAC AAACATCAAAAGAGATCCGGGTCAAACAGATGACCCGGAAAAGGATCCAAGAACAGAAAACGGAGCAGTAACGGTCAAAGAAAAAAGAAAACGGAAACGT ACAAGAGCTCCAAAGAACAAAGACGAAGTTGAAAACCAAAGGATGACTCACATTGCCGTCGAACGTAATCGAAGACGACAAATGAACGAACACTTAAACT CTCTCCGATCTCTCATGCCTCCTTCGTTTCTTCAACGGGGTGACCAAGCTTCGATTGTAGGAGGGGCAATAGATTTCATCAAGGAACTAGAGCAACTCTT GCAATCTCTAGAAGCTGAGAAACGAAAGGATGGAACTGATGAAACTCCTAAAACGGCGTCGTGTTCTTCATCTTCGTCTCTTGCATGCACTAACTCTTCT ATTTCTAGCGTGTCTACGACGTCGGAAAATGGATTTACGGCGAGATTCGGCGGTGGAGATACGACAGAAGTGGAGGCTACGGTGATACAGAACCATGTGA GCTTAAAAGTTCGGTGTAAGAGAGGAAAACGACAGATCTTAAAAGCTATTGTCTCGATTGAAGAACTAAAGCTTGCGATTCTACATCTCACTATCTCTTC TTCCTTTGACTTTGTCATCTACTCTTTCAATCTCAAGATGGAAGATGGTTGTAAATTAGGATCAGCAGATGAGATAGCGACAGCCGTTCATCAGATCTTC GAGCAAATCAACGGTGAAGTCATGTGGTCAAATCTTAGTCGAACT >RE_01D11_translated MSGLMSFGELEDQFGQISDTTMEEKIPFLQMLQCIEHPFTTTEPNQFLQSLLQIQTLESKSCLTLETNIKRDPGQTDDPEKDPRTENGAVTVKEKRKRKR TRAPKNKDEVENQRMTHIAVERNRRRQMNEHLNSLRSLMPPSFLQRGDQASIVGGAIDFIKELEQLLQSLEAEKRKDGTDETPKTASCSSSSSLACTNSS ISSVSTTSENGFTARFGGGDTTEVEATVIQNHVSLKVRCKRGKRQILKAIVSIEELKLAILHLTISSSFDFVIYSFNLKMEDGCKLGSADEIATAVHQIF EQINGEVMWSNLSRT
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 944/945 (99.9%)（アミノ酸配列で100%）一致しました。 10 20 30 40 50 60 70 80 90 100 AT4G01 ATGAGTGGATTGATGAGTTTTGGTGAATTAGAAGACCAATTTGGTCAGATTTCAGACACTACTATGGAAGAGAAGATACCATTTCTGCAAATGCTTCAAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::: RE_01D ATGAGTGGATTGATGAGTTTTGGTGAATTAGAAGACCAATTTGGTCAGATTTCAGACACTACTATGGAAGAGAAGATACCGTTTCTGCAAATGCTTCAAT 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT4G01 GCATAGAACACCCTTTTACAACAACAGAACCAAATCAGTTTCTCCAATCACTTCTCCAGATCCAAACCCTAGAATCAAAGAGCTGTCTCACCCTTGAAAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_01D GCATAGAACACCCTTTTACAACAACAGAACCAAATCAGTTTCTCCAATCACTTCTCCAGATCCAAACCCTAGAATCAAAGAGCTGTCTCACCCTTGAAAC 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT4G01 AAACATCAAAAGAGATCCGGGTCAAACAGATGACCCGGAAAAGGATCCAAGAACAGAAAACGGAGCAGTAACGGTCAAAGAAAAAAGAAAACGGAAACGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_01D AAACATCAAAAGAGATCCGGGTCAAACAGATGACCCGGAAAAGGATCCAAGAACAGAAAACGGAGCAGTAACGGTCAAAGAAAAAAGAAAACGGAAACGT 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT4G01 ACAAGAGCTCCAAAGAACAAAGACGAAGTTGAAAACCAAAGGATGACTCACATTGCCGTCGAACGTAATCGAAGACGACAAATGAACGAACACTTAAACT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_01D ACAAGAGCTCCAAAGAACAAAGACGAAGTTGAAAACCAAAGGATGACTCACATTGCCGTCGAACGTAATCGAAGACGACAAATGAACGAACACTTAAACT 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT4G01 CTCTCCGATCTCTCATGCCTCCTTCGTTTCTTCAACGGGGTGACCAAGCTTCGATTGTAGGAGGGGCAATAGATTTCATCAAGGAACTAGAGCAACTCTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_01D CTCTCCGATCTCTCATGCCTCCTTCGTTTCTTCAACGGGGTGACCAAGCTTCGATTGTAGGAGGGGCAATAGATTTCATCAAGGAACTAGAGCAACTCTT 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT4G01 GCAATCTCTAGAAGCTGAGAAACGAAAGGATGGAACTGATGAAACTCCTAAAACGGCGTCGTGTTCTTCATCTTCGTCTCTTGCATGCACTAACTCTTCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_01D GCAATCTCTAGAAGCTGAGAAACGAAAGGATGGAACTGATGAAACTCCTAAAACGGCGTCGTGTTCTTCATCTTCGTCTCTTGCATGCACTAACTCTTCT 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT4G01 ATTTCTAGCGTGTCTACGACGTCGGAAAATGGATTTACGGCGAGATTCGGCGGTGGAGATACGACAGAAGTGGAGGCTACGGTGATACAGAACCATGTGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_01D ATTTCTAGCGTGTCTACGACGTCGGAAAATGGATTTACGGCGAGATTCGGCGGTGGAGATACGACAGAAGTGGAGGCTACGGTGATACAGAACCATGTGA 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT4G01 GCTTAAAAGTTCGGTGTAAGAGAGGAAAACGACAGATCTTAAAAGCTATTGTCTCGATTGAAGAACTAAAGCTTGCGATTCTACATCTCACTATCTCTTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_01D GCTTAAAAGTTCGGTGTAAGAGAGGAAAACGACAGATCTTAAAAGCTATTGTCTCGATTGAAGAACTAAAGCTTGCGATTCTACATCTCACTATCTCTTC 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT4G01 TTCCTTTGACTTTGTCATCTACTCTTTCAATCTCAAGATGGAAGATGGTTGTAAATTAGGATCAGCAGATGAGATAGCGACAGCCGTTCATCAGATCTTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_01D TTCCTTTGACTTTGTCATCTACTCTTTCAATCTCAAGATGGAAGATGGTTGTAAATTAGGATCAGCAGATGAGATAGCGACAGCCGTTCATCAGATCTTC 810 820 830 840 850 860 870 880 890 900 910 920 930 940 AT4G01 GAGCAAATCAACGGTGAAGTCATGTGGTCAAATCTTAGTCGAACT ::::::::::::::::::::::::::::::::::::::::::::: RE_01D GAGCAAATCAACGGTGAAGTCATGTGGTCAAATCTTAGTCGAACT 910 920 930 940 10 20 30 40 50 60 70 80 90 100 AT4G01 MSGLMSFGELEDQFGQISDTTMEEKIPFLQMLQCIEHPFTTTEPNQFLQSLLQIQTLESKSCLTLETNIKRDPGQTDDPEKDPRTENGAVTVKEKRKRKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_01D MSGLMSFGELEDQFGQISDTTMEEKIPFLQMLQCIEHPFTTTEPNQFLQSLLQIQTLESKSCLTLETNIKRDPGQTDDPEKDPRTENGAVTVKEKRKRKR 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT4G01 TRAPKNKDEVENQRMTHIAVERNRRRQMNEHLNSLRSLMPPSFLQRGDQASIVGGAIDFIKELEQLLQSLEAEKRKDGTDETPKTASCSSSSSLACTNSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_01D TRAPKNKDEVENQRMTHIAVERNRRRQMNEHLNSLRSLMPPSFLQRGDQASIVGGAIDFIKELEQLLQSLEAEKRKDGTDETPKTASCSSSSSLACTNSS 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT4G01 ISSVSTTSENGFTARFGGGDTTEVEATVIQNHVSLKVRCKRGKRQILKAIVSIEELKLAILHLTISSSFDFVIYSFNLKMEDGCKLGSADEIATAVHQIF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_01D ISSVSTTSENGFTARFGGGDTTEVEATVIQNHVSLKVRCKRGKRQILKAIVSIEELKLAILHLTISSSFDFVIYSFNLKMEDGCKLGSADEIATAVHQIF 210 220 230 240 250 260 270 280 290 300 310 AT4G01 EQINGEVMWSNLSRT ::::::::::::::: RE_01D EQINGEVMWSNLSRT 310

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