| Code name | RE_01E09 | |||
|---|---|---|---|---|
| Locus | AT3G51960 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列100%一致 | |||
| comment | ||||
| sequence |
>RE_01E09_684bp ATGTTTTGTTGTTGCAAGGATTGCAGAGGAAACCAACGAGTTTCTAACTTTGATTCTCTAACAGGTGTTTTCTTTGGAGATCTTGAGTTTGGACCTCAGA ATCAAAGATATATAAAGATGAATGAGGAAGAAGATAAAGATCAAGATCGAGTAACGAGAGGATGTAGTCACACTCATAGCTGTAACCCTCCAGGCCCAGA GGATGCTTCTCACTCCCACACATGCTTCCACGCTCACACTCATCTCATCATCTCTCAGGATCAGCAAGAGAATGATCATTCTGACAGTAGCAACAAGAAA CGGTTATGTGGTAATAGAGAGGCAGTGAGGAAGTACAGGGAGAAGAAGAAGGCTCGCACTGCATACCTTGAAGATGAAGTGATGAGATTGCAATCTCTGA ATGAGCAATTCCTTAGAAAACTTCAGAGCCAAGAAATGGTGGAAACTGAATTGATCAGACTCCGGGCTCTTCTGGTAGAGATGCAGGGGAAAATTGAAGT TGAACTTTGTAGTTTCTCGTTTCAGAAACAATGCAACGGTTCTGGTTTTGTGTTCAAAGAAGATGGATGCAACTTAGCAACAAGTAATATGATGTGTGAA GCGGCAAGAGTGGAGTGCGAGGAGGGCCAAACACTTCATGATCCTATTCAATCTTTTGTTCCTCAACCACCACCATTCTCACGT >RE_01E09_translated MFCCCKDCRGNQRVSNFDSLTGVFFGDLEFGPQNQRYIKMNEEEDKDQDRVTRGCSHTHSCNPPGPEDASHSHTCFHAHTHLIISQDQQENDHSDSSNKK RLCGNREAVRKYREKKKARTAYLEDEVMRLQSLNEQFLRKLQSQEMVETELIRLRALLVEMQGKIEVELCSFSFQKQCNGSGFVFKEDGCNLATSNMMCE AARVECEEGQTLHDPIQSFVPQPPPFSR |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 681/684 (99.6%)（アミノ酸配列で227/228 (99.6%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT3G51 ATGTTTTGTTGTTGCAAGGATTGCAGAGGAAACCAACGAGTTTCTAACTTTGATTCTCTAACAGGTGTTTTCTTTGGAGATCTTGAGTTTGGACCTCAGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_01E ATGTTTTGTTGTTGCAAGGATTGCAGAGGAAACCAACGAGTTTCTAACTTTGATTCTCTAACAGGTGTTTTCTTTGGAGATCTTGAGTTTGGACCTCAGA
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT3G51 ATCAAAGATATATAAAGATGAATGAGGAAGAAGATAAAGATCAAGATCGAGTAACGAGAGGATGTAGTCACACTCATAGCTGTAACCCTCCAGGCCCAGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_01E ATCAAAGATATATAAAGATGAATGAGGAAGAAGATAAAGATCAAGATCGAGTAACGAGAGGATGTAGTCACACTCATAGCTGTAACCCTCCAGGCCCAGA
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290
AT3G51 GGATGCTTCTCACTCCCACACATGCTTCCACGCTCACACTCATCTCATCATCTCT---GATCAGCAAGAGAATGATCATTCTGACAGTAGCAACAAGAAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::
RE_01E GGATGCTTCTCACTCCCACACATGCTTCCACGCTCACACTCATCTCATCATCTCTCAGGATCAGCAAGAGAATGATCATTCTGACAGTAGCAACAAGAAA
210 220 230 240 250 260 270 280 290 300
300 310 320 330 340 350 360 370 380 390
AT3G51 CGGTTATGTGGTAATAGAGAGGCAGTGAGGAAGTACAGGGAGAAGAAGAAGGCTCGCACTGCATACCTTGAAGATGAAGTGATGAGATTGCAATCTCTGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_01E CGGTTATGTGGTAATAGAGAGGCAGTGAGGAAGTACAGGGAGAAGAAGAAGGCTCGCACTGCATACCTTGAAGATGAAGTGATGAGATTGCAATCTCTGA
310 320 330 340 350 360 370 380 390 400
400 410 420 430 440 450 460 470 480 490
AT3G51 ATGAGCAATTCCTTAGAAAACTTCAGAGCCAAGAAATGGTGGAAACTGAATTGATCAGACTCCGGGCTCTTCTGGTAGAGATGCAGGGGAAAATTGAAGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_01E ATGAGCAATTCCTTAGAAAACTTCAGAGCCAAGAAATGGTGGAAACTGAATTGATCAGACTCCGGGCTCTTCTGGTAGAGATGCAGGGGAAAATTGAAGT
410 420 430 440 450 460 470 480 490 500
500 510 520 530 540 550 560 570 580 590
AT3G51 TGAACTTTGTAGTTTCTCGTTTCAGAAACAATGCAACGGTTCTGGTTTTGTGTTCAAAGAAGATGGATGCAACTTAGCAACAAGTAATATGATGTGTGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_01E TGAACTTTGTAGTTTCTCGTTTCAGAAACAATGCAACGGTTCTGGTTTTGTGTTCAAAGAAGATGGATGCAACTTAGCAACAAGTAATATGATGTGTGAA
510 520 530 540 550 560 570 580 590 600
600 610 620 630 640 650 660 670 680
AT3G51 GCGGCAAGAGTGGAGTGCGAGGAGGGCCAAACACTTCATGATCCTATTCAATCTTTTGTTCCTCAACCACCACCATTCTCACGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_01E GCGGCAAGAGTGGAGTGCGAGGAGGGCCAAACACTTCATGATCCTATTCAATCTTTTGTTCCTCAACCACCACCATTCTCACGT
610 620 630 640 650 660 670 680
10 20 30 40 50 60 70 80 90
AT3G51 MFCCCKDCRGNQRVSNFDSLTGVFFGDLEFGPQNQRYIKMNEEEDKDQDRVTRGCSHTHSCNPPGPEDASHSHTCFHAHTHLIIS-DQQENDHSDSSNKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::
RE_01E MFCCCKDCRGNQRVSNFDSLTGVFFGDLEFGPQNQRYIKMNEEEDKDQDRVTRGCSHTHSCNPPGPEDASHSHTCFHAHTHLIISQDQQENDHSDSSNKK
10 20 30 40 50 60 70 80 90 100
100 110 120 130 140 150 160 170 180 190
AT3G51 RLCGNREAVRKYREKKKARTAYLEDEVMRLQSLNEQFLRKLQSQEMVETELIRLRALLVEMQGKIEVELCSFSFQKQCNGSGFVFKEDGCNLATSNMMCE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_01E RLCGNREAVRKYREKKKARTAYLEDEVMRLQSLNEQFLRKLQSQEMVETELIRLRALLVEMQGKIEVELCSFSFQKQCNGSGFVFKEDGCNLATSNMMCE
110 120 130 140 150 160 170 180 190 200
200 210 220
AT3G51 AARVECEEGQTLHDPIQSFVPQPPPFSR
::::::::::::::::::::::::::::
RE_01E AARVECEEGQTLHDPIQSFVPQPPPFSR
210 220
|
|||