◆◆◆RE_01G03 detail◆◆◆

Code name	RE_01G03
Locus	AT5G39660
Forward primer
Reverse primer
Alignment with TAIR7CDS	-
comment	mistake
sequence	>RE_01G03_1266bp ATGGCTGATCCGGCGATTAAGCTCTTTGGAAAGACGATTCCTTTACCTGAGCTTGGTGTTGTTGATTCTTCTTCTAGCTATACCGGATTTTTAACCGAAA CTCAGATTCCTGTTCGGTTATCAGATTCGTGTACCGGCGATGATGATGATGAAGAGATGGGTGATTCCGGTTTAGGACGAGAAGAAGGTGATGATGTTGG TGATGGTGGAGGAGAGAGCGAGACTGATAAAAAGGAAGAAAAAGATAGTGAGTGTCAGGAAGAGTCATTGAGGAATGAATCTAATGATGTTACTACTACT ACATCGGGTATAACTGAAAAAACGGAAACAACAAAAGCTGCAAAGACGAATGAAGAGTCAGGTGGTACTGCTTGCTCTCAAGAGGGGAAGTTAAAGAAAC CTGATAAGATTCTACCGTGTCCGCGATGTAACAGCATGGAAACCAAGTTCTGTTACTACAACAACTATAATGTTAACCAACCTCGCCATTTCTGCAAGAA ATGTCAGAGATATTGGACAGCTGGTGGAACGATGAGGAATGTTCCGGTTGGTGCTGGGAGACGTAAGAATAAGAGTCCAGCTTCTCATTATAACCGTCAT GTAAGTATAACATCTGCGGAAGCTATGCAGAAGGTGGCGAGAACTGATCTTCAACATCCTAATGGTGCAAATCTTCTCACTTTTGGCTCTGATTCTGTGC TTTGTGAATCTATGGCTTCTGGATTGAATCTTGTTGAGAAGTCATTGTTGAAGACACAAACTGTATTGCAAGAACCCAATGAAGGCTTGAAGATTACGGT TCCGTTAAACCAGACAAACGAAGAAGCTGGAACAGTCAGCCCGTTACCAAAAGTTCCATGCTTTCCAGGACCACCACCAACTTGGCCTTACGCTTGGAAC GGAGTTTCGTGGACGATTTTACCGTTTTACCCTCCACCGGCTTACTGGAGCTGCCCGGGGGTTTCACCGGGGGCATGGAACAGCTTCACATGGATGCCAC AACCCAATTCACCATCTGGTTCCAATCCAAATTCTCCTACACTAGGTAAACATTCACGTGACGAGAACGCTGCTGAACCAGGAACCGCTTTTGATGAAAC CGAGTCACTTGGTAGGGAGAAAAGCAAACCCGAGAGATGCTTGTGGGTTCCCAAGACGCTGAGGATTGATGATCCAGAGGAAGCTGCTAAAAGTTCCATC TGGGAAACATTAGGGATCAAAAAAGACGAAAATGCGGATACTTTCGGAGCTTTCAGATCATCAACC >RE_01G03_translated MADPAIKLFGKTIPLPELGVVDSSSSYTGFLTETQIPVRLSDSCTGDDDDEEMGDSGLGREEGDDVGDGGGESETDKKEEKDSECQEESLRNESNDVTTT TSGITEKTETTKAAKTNEESGGTACSQEGKLKKPDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKSPASHYNRH VSITSAEAMQKVARTDLQHPNGANLLTFGSDSVLCESMASGLNLVEKSLLKTQTVLQEPNEGLKITVPLNQTNEEAGTVSPLPKVPCFPGPPPTWPYAWN GVSWTILPFYPPPAYWSCPGVSPGAWNSFTWMPQPNSPSGSNPNSPTLGKHSRDENAAEPGTAFDETESLGREKSKPERCLWVPKTLRIDDPEEAAKSSI WETLGIKKDENADTFGAFRSST
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1266/1371 (92.3%)（アミノ酸配列で422/457 (92.3%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT5G39 ATGGCTGATCCGGCGATTAAGCTCTTTGGAAAGACGATTCCTTTACCTGAGCTTGGTGTTGTTGATTCTTCTTCTAGCTATACCGGATTTTTAACCGAAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_01G ATGGCTGATCCGGCGATTAAGCTCTTTGGAAAGACGATTCCTTTACCTGAGCTTGGTGTTGTTGATTCTTCTTCTAGCTATACCGGATTTTTAACCGAAA 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT5G39 CTCAGATTCCTGTTCGGTTATCAGATTCGTGTACCGGCGATGATGATGATGAAGAGATGGGTGATTCCGGTTTAGGACGAGAAGAAGGTGATGATGTTGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_01G CTCAGATTCCTGTTCGGTTATCAGATTCGTGTACCGGCGATGATGATGATGAAGAGATGGGTGATTCCGGTTTAGGACGAGAAGAAGGTGATGATGTTGG 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT5G39 TGATGGTGGAGGAGAGAGCGAGACTGATAAAAAGGAAGAAAAAGATAGTGAGTGTCAGGAAGAGTCATTGAGGAATGAATCTAATGATGTTACTACTACT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_01G TGATGGTGGAGGAGAGAGCGAGACTGATAAAAAGGAAGAAAAAGATAGTGAGTGTCAGGAAGAGTCATTGAGGAATGAATCTAATGATGTTACTACTACT 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT5G39 ACATCGGGTATAACTGAAAAAACGGAAACAACAAAAGCTGCAAAGACGAATGAAGAGTCAGGTGGTACTGCTTGCTCTCAAGAGGGGAAGTTAAAGAAAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_01G ACATCGGGTATAACTGAAAAAACGGAAACAACAAAAGCTGCAAAGACGAATGAAGAGTCAGGTGGTACTGCTTGCTCTCAAGAGGGGAAGTTAAAGAAAC 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT5G39 CTGATAAGATTCTACCGTGTCCGCGATGTAACAGCATGGAAACCAAGTTCTGTTACTACAACAACTATAATGTTAACCAACCTCGCCATTTCTGCAAGAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_01G CTGATAAGATTCTACCGTGTCCGCGATGTAACAGCATGGAAACCAAGTTCTGTTACTACAACAACTATAATGTTAACCAACCTCGCCATTTCTGCAAGAA 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT5G39 ATGTCAGAGATATTGGACAGCTGGTGGAACGATGAGGAATGTTCCGGTTGGTGCTGGGAGACGTAAGAATAAGAGTCCAGCTTCTCATTATAACCGTCAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_01G ATGTCAGAGATATTGGACAGCTGGTGGAACGATGAGGAATGTTCCGGTTGGTGCTGGGAGACGTAAGAATAAGAGTCCAGCTTCTCATTATAACCGTCAT 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT5G39 GTAAGTATAACATCTGCGGAAGCTATGCAGAAGGTGGCGAGAACTGATCTTCAACATCCTAATGGTGCAAATCTTCTCACTTTTGGCTCTGATTCTGTGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_01G GTAAGTATAACATCTGCGGAAGCTATGCAGAAGGTGGCGAGAACTGATCTTCAACATCCTAATGGTGCAAATCTTCTCACTTTTGGCTCTGATTCTGTGC 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT5G39 TTTGTGAATCTATGGCTTCTGGATTGAATCTTGTTGAGAAGTCATTGTTGAAGACACAAACTGTATTGCAAGAACCCAATGAAGGCTTGAAGATTACGGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_01G TTTGTGAATCTATGGCTTCTGGATTGAATCTTGTTGAGAAGTCATTGTTGAAGACACAAACTGTATTGCAAGAACCCAATGAAGGCTTGAAGATTACGGT 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT5G39 TCCGTTAAACCAGACAAACGAAGAAGCTGGAACAGTCAGCCCGTTACCAAAAGTTCCATGCTTTCCAGGACCACCACCAACTTGGCCTTACGCTTGGAAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_01G TCCGTTAAACCAGACAAACGAAGAAGCTGGAACAGTCAGCCCGTTACCAAAAGTTCCATGCTTTCCAGGACCACCACCAACTTGGCCTTACGCTTGGAAC 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT5G39 GGAGTTTCGTGGACGATTTTACCGTTTTACCCTCCACCGGCTTACTGGAGCTGCCCGGGGGTTTCACCGGGGGCATGGAACAGCTTCACATGGATGCCAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_01G GGAGTTTCGTGGACGATTTTACCGTTTTACCCTCCACCGGCTTACTGGAGCTGCCCGGGGGTTTCACCGGGGGCATGGAACAGCTTCACATGGATGCCAC 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT5G39 AACCCAATTCACCATCTGGTTCCAATCCAAATTCTCCTACACTAGGTAAACATTCACGTGACGAGAACGCTGCTGAACCAGGAACCGCTTTTGATGAAAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_01G AACCCAATTCACCATCTGGTTCCAATCCAAATTCTCCTACACTAGGTAAACATTCACGTGACGAGAACGCTGCTGAACCAGGAACCGCTTTTGATGAAAC 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT5G39 CGAGTCACTTGGTAGGGAGAAAAGCAAACCCGAGAGATGCTTGTGGGTTCCCAAGACGCTGAGGATTGATGATCCAGAGGAAGCTGCTAAAAGTTCCATC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_01G CGAGTCACTTGGTAGGGAGAAAAGCAAACCCGAGAGATGCTTGTGGGTTCCCAAGACGCTGAGGATTGATGATCCAGAGGAAGCTGCTAAAAGTTCCATC 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 AT5G39 TGGGAAACATTAGGGATCAAAAAAGACGAAAATGCGGATACTTTCGGAGCTTTCAGATCATCAACCAAAGAAAAAAGCAGTCTTTCTGAAGGAAGACTTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_01G TGGGAAACATTAGGGATCAAAAAAGACGAAAATGCGGATACTTTCGGAGCTTTCAGATCATCAACC---------------------------------- 1210 1220 1230 1240 1250 1260 1310 1320 1330 1340 1350 1360 1370 AT5G39 CGGGAAGAAGACCGGAGTTGCAAGCGAATCCTGCTGCTCTTTCTAGGTCAGCAAACTTCCATGAGAGCTCA RE_01G ----------------------------------------------------------------------- 10 20 30 40 50 60 70 80 90 100 AT5G39 MADPAIKLFGKTIPLPELGVVDSSSSYTGFLTETQIPVRLSDSCTGDDDDEEMGDSGLGREEGDDVGDGGGESETDKKEEKDSECQEESLRNESNDVTTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_01G MADPAIKLFGKTIPLPELGVVDSSSSYTGFLTETQIPVRLSDSCTGDDDDEEMGDSGLGREEGDDVGDGGGESETDKKEEKDSECQEESLRNESNDVTTT 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT5G39 TSGITEKTETTKAAKTNEESGGTACSQEGKLKKPDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKSPASHYNRH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_01G TSGITEKTETTKAAKTNEESGGTACSQEGKLKKPDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKSPASHYNRH 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT5G39 VSITSAEAMQKVARTDLQHPNGANLLTFGSDSVLCESMASGLNLVEKSLLKTQTVLQEPNEGLKITVPLNQTNEEAGTVSPLPKVPCFPGPPPTWPYAWN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_01G VSITSAEAMQKVARTDLQHPNGANLLTFGSDSVLCESMASGLNLVEKSLLKTQTVLQEPNEGLKITVPLNQTNEEAGTVSPLPKVPCFPGPPPTWPYAWN 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT5G39 GVSWTILPFYPPPAYWSCPGVSPGAWNSFTWMPQPNSPSGSNPNSPTLGKHSRDENAAEPGTAFDETESLGREKSKPERCLWVPKTLRIDDPEEAAKSSI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_01G GVSWTILPFYPPPAYWSCPGVSPGAWNSFTWMPQPNSPSGSNPNSPTLGKHSRDENAAEPGTAFDETESLGREKSKPERCLWVPKTLRIDDPEEAAKSSI 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 AT5G39 WETLGIKKDENADTFGAFRSSTKEKSSLSEGRLPGRRPELQANPAALSRSANFHESS :::::::::::::::::::::: RE_01G WETLGIKKDENADTFGAFRSST----------------------------------- 410 420

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