| Code name | RE_01G08 | |||
|---|---|---|---|---|
| Locus | AT1G62360 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | ã¢ããé ¸é å74.90%ä¸è´ | |||
| comment | ‘O”¼288bpŒ‡ | |||
| sequence |
>RE_01G08_858bp ATGGAGATCCATCATAACGAAATCGTTGCAGGAGGAATCAACCCTTGCTCCTCTTCCTCTTCTTCAGCCTCTGTCAAGGCCAAGATCATGGCTCATCCTC ACTACCACCGCCTCTTGGCCGCTTATGTCAATTGTCAGAAGGTTGGAGCACCACCGGAGGTTGTGGCGAGGCTAGAGGAGGCATGCTCGTCTGCCGCAGC CGCTGCCGCATCTATGGGACCAACAGGATGTCTAGGTGAAGATCCAGGGCTTGATCAATTCATGGAAGCTTACTGTGAAATGCTCGTTAAGTATGAGCAA GAGCTCTCCAAACCTTTCAAGGAAGCTATGGTCTTCCTTCAACGTGTCGAGTGTCAATTCAAATCCCTCTCTCTATCCTCACCTTCCTCTTTCTCCGGTT ATGGAGAGACAGCAATTGATAGGAACAATAATGGGTCATCCGAGGAAGAAGTCGATATGAACAATGAATTTGTAGATCCACAAGCTGAGGATAGAGAGCT TAAAGGACAGCTCTTGCGCAAGTACAGTGGTTACTTAGGGAGCCTCAAGCAAGAGTTCATGAAGAAGAGGAAGAAAGGAAAGCTCCCTAAAGAAGCTCGT CAACAACTGCTTGATTGGTGGAGCCGTCACTACAAATGGCCTTACCCTTCGGAGCAACAAAAGCTCGCCCTTGCGGAATCAACGGGGCTGGACCAGAAAC AGATAAACAATTGGTTCATAAACCAGAGGAAACGGCATTGGAAGCCGTCGGAGGACATGCAGTTTGTAGTAATGGACGCAACACATCCTCACCATTACTT CATGGATAATGTCTTGGGCAATCCTTTCCCAATGGATCACATCTCCTCCACCATGCTT >RE_01G08_translated MEIHHNEIVAGGINPCSSSSSSASVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACSSAAAAAASMGPTGCLGEDPGLDQFMEAYCEMLVKYEQ ELSKPFKEAMVFLQRVECQFKSLSLSSPSSFSGYGETAIDRNNNGSSEEEVDMNNEFVDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEAR QQLLDWWSRHYKWPYPSEQQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDATHPHHYFMDNVLGNPFPMDHISSTML |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 858/1146 (74.9%)（アミノ酸配列で286/382 (74.9%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT1G62 ATGGAGAGTGGTTCCAACAGCACTTCTTGTCCAATGGCTTTTGCCGGGGATAATAGTGATGGTCCGATGTGTCCTATGATGATGATGATGCCGCCCATCA
RE_01G ----------------------------------------------------------------------------------------------------
110 120 130 140 150 160 170 180 190 200
AT1G62 TGACATCACATCAACATCATGGTCATGATCATCAACATCAACAACAAGAACATGATGGTTATGCATATCAGTCACACCACCAACAAAGTAGTTCCCTTTT
RE_01G ----------------------------------------------------------------------------------------------------
210 220 230 240 250 260 270 280 290 300
AT1G62 TCTTCAATCACTAGCTCCTCCCCAAGGAACTAAGAACAAAGTTGCTTCTTCTTCTTCTCCTTCCTCTTGTGCTCCTGCCTATTCTCTAATGGAGATCCAT
::::::::::::
RE_01G ----------------------------------------------------------------------------------------ATGGAGATCCAT
10
310 320 330 340 350 360 370 380 390 400
AT1G62 CATAACGAAATCGTTGCAGGAGGAATCAACCCTTGCTCCTCTTCCTCTTCTTCAGCCTCTGTCAAGGCCAAGATCATGGCTCATCCTCACTACCACCGCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_01G CATAACGAAATCGTTGCAGGAGGAATCAACCCTTGCTCCTCTTCCTCTTCTTCAGCCTCTGTCAAGGCCAAGATCATGGCTCATCCTCACTACCACCGCC
20 30 40 50 60 70 80 90 100 110
410 420 430 440 450 460 470 480 490 500
AT1G62 TCTTGGCCGCTTATGTCAATTGTCAGAAGGTTGGAGCACCACCGGAGGTTGTGGCGAGGCTAGAGGAGGCATGCTCGTCTGCCGCAGCCGCTGCCGCATC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_01G TCTTGGCCGCTTATGTCAATTGTCAGAAGGTTGGAGCACCACCGGAGGTTGTGGCGAGGCTAGAGGAGGCATGCTCGTCTGCCGCAGCCGCTGCCGCATC
120 130 140 150 160 170 180 190 200 210
510 520 530 540 550 560 570 580 590 600
AT1G62 TATGGGACCAACAGGATGTCTAGGTGAAGATCCAGGGCTTGATCAATTCATGGAAGCTTACTGTGAAATGCTCGTTAAGTATGAGCAAGAGCTCTCCAAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_01G TATGGGACCAACAGGATGTCTAGGTGAAGATCCAGGGCTTGATCAATTCATGGAAGCTTACTGTGAAATGCTCGTTAAGTATGAGCAAGAGCTCTCCAAA
220 230 240 250 260 270 280 290 300 310
610 620 630 640 650 660 670 680 690 700
AT1G62 CCTTTCAAGGAAGCTATGGTCTTCCTTCAACGTGTCGAGTGTCAATTCAAATCCCTCTCTCTATCCTCACCTTCCTCTTTCTCCGGTTATGGAGAGACAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_01G CCTTTCAAGGAAGCTATGGTCTTCCTTCAACGTGTCGAGTGTCAATTCAAATCCCTCTCTCTATCCTCACCTTCCTCTTTCTCCGGTTATGGAGAGACAG
320 330 340 350 360 370 380 390 400 410
710 720 730 740 750 760 770 780 790 800
AT1G62 CAATTGATAGGAACAATAATGGGTCATCCGAGGAAGAAGTCGATATGAACAATGAATTTGTAGATCCACAAGCTGAGGATAGAGAGCTTAAAGGACAGCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_01G CAATTGATAGGAACAATAATGGGTCATCCGAGGAAGAAGTCGATATGAACAATGAATTTGTAGATCCACAAGCTGAGGATAGAGAGCTTAAAGGACAGCT
420 430 440 450 460 470 480 490 500 510
810 820 830 840 850 860 870 880 890 900
AT1G62 CTTGCGCAAGTACAGTGGTTACTTAGGGAGCCTCAAGCAAGAGTTCATGAAGAAGAGGAAGAAAGGAAAGCTCCCTAAAGAAGCTCGTCAACAACTGCTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_01G CTTGCGCAAGTACAGTGGTTACTTAGGGAGCCTCAAGCAAGAGTTCATGAAGAAGAGGAAGAAAGGAAAGCTCCCTAAAGAAGCTCGTCAACAACTGCTT
520 530 540 550 560 570 580 590 600 610
910 920 930 940 950 960 970 980 990 1000
AT1G62 GATTGGTGGAGCCGTCACTACAAATGGCCTTACCCTTCGGAGCAACAAAAGCTCGCCCTTGCGGAATCAACGGGGCTGGACCAGAAACAGATAAACAATT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_01G GATTGGTGGAGCCGTCACTACAAATGGCCTTACCCTTCGGAGCAACAAAAGCTCGCCCTTGCGGAATCAACGGGGCTGGACCAGAAACAGATAAACAATT
620 630 640 650 660 670 680 690 700 710
1010 1020 1030 1040 1050 1060 1070 1080 1090 1100
AT1G62 GGTTCATAAACCAGAGGAAACGGCATTGGAAGCCGTCGGAGGACATGCAGTTTGTAGTAATGGACGCAACACATCCTCACCATTACTTCATGGATAATGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_01G GGTTCATAAACCAGAGGAAACGGCATTGGAAGCCGTCGGAGGACATGCAGTTTGTAGTAATGGACGCAACACATCCTCACCATTACTTCATGGATAATGT
720 730 740 750 760 770 780 790 800 810
1110 1120 1130 1140
AT1G62 CTTGGGCAATCCTTTCCCAATGGATCACATCTCCTCCACCATGCTT
::::::::::::::::::::::::::::::::::::::::::::::
RE_01G CTTGGGCAATCCTTTCCCAATGGATCACATCTCCTCCACCATGCTT
820 830 840 850
10 20 30 40 50 60 70 80 90 100
AT1G62 MESGSNSTSCPMAFAGDNSDGPMCPMMMMMPPIMTSHQHHGHDHQHQQQEHDGYAYQSHHQQSSSLFLQSLAPPQGTKNKVASSSSPSSCAPAYSLMEIH
::::
RE_01G ------------------------------------------------------------------------------------------------MEIH
110 120 130 140 150 160 170 180 190 200
AT1G62 HNEIVAGGINPCSSSSSSASVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACSSAAAAAASMGPTGCLGEDPGLDQFMEAYCEMLVKYEQELSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_01G HNEIVAGGINPCSSSSSSASVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACSSAAAAAASMGPTGCLGEDPGLDQFMEAYCEMLVKYEQELSK
10 20 30 40 50 60 70 80 90 100
210 220 230 240 250 260 270 280 290 300
AT1G62 PFKEAMVFLQRVECQFKSLSLSSPSSFSGYGETAIDRNNNGSSEEEVDMNNEFVDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_01G PFKEAMVFLQRVECQFKSLSLSSPSSFSGYGETAIDRNNNGSSEEEVDMNNEFVDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLL
110 120 130 140 150 160 170 180 190 200
310 320 330 340 350 360 370 380
AT1G62 DWWSRHYKWPYPSEQQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDATHPHHYFMDNVLGNPFPMDHISSTML
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_01G DWWSRHYKWPYPSEQQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDATHPHHYFMDNVLGNPFPMDHISSTML
210 220 230 240 250 260 270 280
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