| Code name | RE_01G12 | |||
|---|---|---|---|---|
| Locus | AT2G28610 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | ã¢ããé ¸é å10.70%ä¸è´ | |||
| comment | ‘O”¼80bp‚Ì‚Ý | |||
| sequence |
>RE_01G12_732bp ATGAGTCCTGTGGCTTCAACGAGGTGGTGTCCGACGCCGGAGCAACTGATGATCTTGGAAGAGATGTACCGGAGTGGTATACGGACTCCGAATGCGGTGC AGATACAACAGATCACAGCTCACTTGGCGTTCTATGGAAGAATCGAGGGCAAAAACGTCTTTTACTGGTTCCAGAACCATAAGGCTAGAGATAGACAGAA GCTGAGGAAGAAACTAGCCAAGCAACTTCACCAGCAACAACATCAACTTCAACTCCAACTTCAGCAGATCAAACCAAAACCAATATCATCGATGATTTCT CAACCAGTTAATAAGAATATCATCGATCATCACAATCCTTATCATCATCACCATCATAATCATCATCATAATCATCATCGTCCATATGATCATATGTCCT TTGATTGCTGCTCTCATCCTTCTCCCATGTGTCTTCCTCATCAGGGAACTGGAGTAGGAGAAGCTCCAAGCAAAGTGATGAATGAATATTACTGCACCAA AAGTGGAGCTGAAGAGATATTGATGCAAAAATCAATCACGGGTCCAAACTCATCGTACGGTCGAGATTGGATGATGATGATGGATATGGGGCCGCGACCA TCATATCCCTCATCATCATCATCACCCATTTCATGTTGTAACATGATGATGAGCAGTCCAAAGATACCATTGAAAACCCTGGAACTTTTCCCAATCTCAT CTATCAACTCCAAACAAGACAGTACCAAACTT >RE_01G12_translated MSPVASTRWCPTPEQLMILEEMYRSGIRTPNAVQIQQITAHLAFYGRIEGKNVFYWFQNHKARDRQKLRKKLAKQLHQQQHQLQLQLQQIKPKPISSMIS QPVNKNIIDHHNPYHHHHHNHHHNHHRPYDHMSFDCCSHPSPMCLPHQGTGVGEAPSKVMNEYYCTKSGAEEILMQKSITGPNSSYGRDWMMMMDMGPRP SYPSSSSSPISCCNMMMSSPKIPLKTLELFPISSINSKQDSTKL |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 730/732 (99.7%)（アミノ酸配列で100%）一致しました。
10 20 30 40 50 60 70 80 90 100
AT2G28 ATGAGTCCTGTGGCTTCAACGAGGTGGTGTCCGACGCCGGAGCAACTGATGATCTTGGAAGAGATGTACCGGAGTGGTATACGGACTCCGAATGCGGTGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_01G ATGAGTCCTGTGGCTTCAACGAGGTGGTGTCCGACGCCGGAGCAACTGATGATCTTGGAAGAGATGTACCGGAGTGGTATACGGACTCCGAATGCGGTGC
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT2G28 AGATACAACAGATCACAGCTCACTTGGCGTTCTATGGAAGAATCGAGGGCAAAAACGTCTTTTACTGGTTCCAGAACCATAAGGCTAGAGATAGACAGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_01G AGATACAACAGATCACAGCTCACTTGGCGTTCTATGGAAGAATCGAGGGCAAAAACGTCTTTTACTGGTTCCAGAACCATAAGGCTAGAGATAGACAGAA
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT2G28 GCTGAGGAAGAAACTAGCCAAGCAACTTCACCAGCAACAACATCAACTTCAACTCCAACTTCAGCAGATCAAACCAAAACCAATATCATCGATGATTTCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_01G GCTGAGGAAGAAACTAGCCAAGCAACTTCACCAGCAACAACATCAACTTCAACTCCAACTTCAGCAGATCAAACCAAAACCAATATCATCGATGATTTCT
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT2G28 CAACCAGTTAATAAGAATATCATCGATCATCACAATCCTTATCATCATCACCATCATAATCATCATCATAATCATCATCGTCCATATGATCATATGTCCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_01G CAACCAGTTAATAAGAATATCATCGATCATCACAATCCTTATCATCATCACCATCATAATCATCATCATAATCATCATCGTCCATATGATCATATGTCCT
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT2G28 TTGATTGCTGCTCTCATCCTTCTCCCATGTGTCTTCCTCATCAGGGAACTGGAGTAGGAGAAGCTCCAAGCAAAGTGATGAATGAATATTACTGCACCAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_01G TTGATTGCTGCTCTCATCCTTCTCCCATGTGTCTTCCTCATCAGGGAACTGGAGTAGGAGAAGCTCCAAGCAAAGTGATGAATGAATATTACTGCACCAA
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT2G28 AAGTGGAGCTGAAGAGATATTGATGCAAAAATCAATCACGGGTCCAAACTCATCGTACGGTCGAGATTGGATGATGATGATGGATATGGGCCCACGACCA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :: ::::::
RE_01G AAGTGGAGCTGAAGAGATATTGATGCAAAAATCAATCACGGGTCCAAACTCATCGTACGGTCGAGATTGGATGATGATGATGGATATGGGGCCGCGACCA
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660 670 680 690 700
AT2G28 TCATATCCCTCATCATCATCATCACCCATTTCATGTTGTAACATGATGATGAGCAGTCCAAAGATACCATTGAAAACCCTGGAACTTTTCCCAATCTCAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_01G TCATATCCCTCATCATCATCATCACCCATTTCATGTTGTAACATGATGATGAGCAGTCCAAAGATACCATTGAAAACCCTGGAACTTTTCCCAATCTCAT
610 620 630 640 650 660 670 680 690 700
710 720 730
AT2G28 CTATCAACTCCAAACAAGACAGTACCAAACTT
::::::::::::::::::::::::::::::::
RE_01G CTATCAACTCCAAACAAGACAGTACCAAACTT
710 720 730
10 20 30 40 50 60 70 80 90 100
AT2G28 MSPVASTRWCPTPEQLMILEEMYRSGIRTPNAVQIQQITAHLAFYGRIEGKNVFYWFQNHKARDRQKLRKKLAKQLHQQQHQLQLQLQQIKPKPISSMIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_01G MSPVASTRWCPTPEQLMILEEMYRSGIRTPNAVQIQQITAHLAFYGRIEGKNVFYWFQNHKARDRQKLRKKLAKQLHQQQHQLQLQLQQIKPKPISSMIS
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT2G28 QPVNKNIIDHHNPYHHHHHNHHHNHHRPYDHMSFDCCSHPSPMCLPHQGTGVGEAPSKVMNEYYCTKSGAEEILMQKSITGPNSSYGRDWMMMMDMGPRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_01G QPVNKNIIDHHNPYHHHHHNHHHNHHRPYDHMSFDCCSHPSPMCLPHQGTGVGEAPSKVMNEYYCTKSGAEEILMQKSITGPNSSYGRDWMMMMDMGPRP
110 120 130 140 150 160 170 180 190 200
210 220 230 240
AT2G28 SYPSSSSSPISCCNMMMSSPKIPLKTLELFPISSINSKQDSTKL
::::::::::::::::::::::::::::::::::::::::::::
RE_01G SYPSSSSSPISCCNMMMSSPKIPLKTLELFPISSINSKQDSTKL
210 220 230 240
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