| Code name | RE_01H01 | |||
|---|---|---|---|---|
| Locus | AT2G46680 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | ã¢ããé ¸é å17.80%ä¸è´ | |||
| comment | RE_01G12‚ƈê’v | |||
| sequence |
>RE_01H01_732bp ATGAGTCCTGTGGCTTCAACGAGGTGGTGTCCGACGCCGGAGCAACTGATGATCTTGGAAGAGATGTACCGGAGTGGTATACGGACTCCGAATGCGGTGC AGATACAACAGATCACAGCTCACTTGGCGTTCTATGGAAGAATCGAGGGCAAAAACGTCTTTTACTGGTTCCAGAACCATAAGGCTAGAGATAGACAGAA GCTGAGGAAGAAACTAGCCAAGCAACTTCACCAGCAACAACATCAACTTCAACTCCAACTTCAGCAGATCAAACCAAAACCAATATCATCGATGATTTCT CAACCAGTTAATAAGAATATCATCGATCATCACAATCCTTATCATCATCACCATCATAATCATCATCATAATCATCATCGTCCATATGATCATATGTCCT TTGATTGCTGCTCTCATCCTTCTCCCATGTGTCTTCCTCATCAGGGAACTGGAGTAGGAGAAGCTCCAAGCAAAGTGATGAATGAATATTACTGCACCAA AAGTGGAGCTGAAGAGATATTGATGCAAAAATCAATCACGGGTCCAAACTCATCGTACGGTCGAGATTGGATGATGATGATGGATATGGGCCCACGACCA TCATATCCCTCATCATCATCATCACCCATTTCATGTTGTAACATGATGATGAGCAGTCCAAAGATACCATTGAAAACCCTGGAACTTTTCCCAATCTCAT CTATCAACTCCAAACAAGACAGTACCAAACTT >RE_01H01_translated MSPVASTRWCPTPEQLMILEEMYRSGIRTPNAVQIQQITAHLAFYGRIEGKNVFYWFQNHKARDRQKLRKKLAKQLHQQQHQLQLQLQQIKPKPISSMIS QPVNKNIIDHHNPYHHHHHNHHHNHHRPYDHMSFDCCSHPSPMCLPHQGTGVGEAPSKVMNEYYCTKSGAEEILMQKSITGPNSSYGRDWMMMMDMGPRP SYPSSSSSPISCCNMMMSSPKIPLKTLELFPISSINSKQDSTKL |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 409/979 (41.8%)（アミノ酸配列で55/330 (16.7%)）一致しました。
10 20 30 40 50 60 70 80
AT2G46 ATGACAGAAG----GTGGAGAATATTCTCCGGCGA--TGATGTCAG----CAGAGCCATTCTTGACCAT-GAAGAAGATGAA--GAAGAGCAACCACAAC
::: :: :::: :: : ::: :: :::: : : :::: : : ::: : : :::: ::::: : : :: :
RE_01H ATG-----AGTCCTGTGG--------CTTCAACGAGGTGGTGTCCGACGCCGGAGCAACTGATGATCTTGGAAG-AGATGTACCGGAGTG----------
10 20 30 40 50 60 70
90 100 110 120 130 140 150 160 170
AT2G46 AAGAACAATCAGA----GAA---GGTTTAGCGACGAGCAGATCA-AG-TCACTGGAGATGATGTTTGAGTCTGAGACAAGGCTTGAGCCAAGGAAGAAGG
: : : : :: ::: ::: :: :: : ::::::: :: ::::: :: ::: : : :::::::
RE_01H --GTATA--CGGACTCCGAATGCGGTGCAGATAC-AACAGATCACAGCTCACT-----TGGCGTT----------------------CTATGGAAGAA--
80 90 100 110 120 130 140
180 190 200 210 220 230 240 250
AT2G46 TTCAATTAGCTAGAGAGCTAGGGTTGCAGCCGAGGCAA----GTGGCTAT--ATGGTTTCAGAACAAGAGGGCT---------------CGTTGGAA---
: ::: ::::: :: :: : ::::: :::::: : : :::: : ::::
RE_01H ----------TCGAG------------------GGCAAAAACGT--CTTTTACTGGTTCCAGAACCATAAGGCTAGAGATAGACAGAAGCTGAGGAAGAA
150 160 170 180 190 200 210
260 270 280 290 300 310 320
AT2G46 ---ATCCAAGCAGCT---CGAG-----------ACT--GAGTACAACATTC-TCAGA------CAAAACTA-------CGACAACTTGGCTTCTCAGTTC
: ::::::: :: : :: ::: : : :::: ::: :::: :::::: : ::: :: :::::: :
RE_01H ACTAGCCAAGCAACTTCACCAGCAACAACATCAACTTCAACTCCAAC-TTCAGCAGATCAAACCAAAACCAATATCATCGA-----TGATTTCTCA--AC
220 230 240 250 260 270 280 290 300
330 340 350
AT2G46 GAGTCCTTAAAGAAAGAAAA------------ACAAGCTTTA--------------------------------------GT-----------------C
:: :::: ::::: : :::: : ::: :: :
RE_01H CAG---TTAA--TAAGAATATCATCGATCATCACAATCCTTATCATCATCACCATCATAATCATCATCATAATCATCATCGTCCATATGATCATATGTCC
310 320 330 340 350 360 370 380 390
360 370 380 390 400 410 420 430 440
AT2G46 TCTGAGTTGCAGAGGCTAA----------AAGAGGCGACGCAAAAGAAGACACAGGAGGAGGAAAGGCAGTGTAGT-GGAGATCAAGCGGTGGTTGCTCT
: ::: :::: : :: : : : : : : : :: :: :: : :: ::: ::::: ::::
RE_01H TTTGA-TTGCTG-CTCTCATCCTTCTCCCATGTGTCTTC-----------CTCATCAG-------GGAACTGGAGTAGGAGA------------AGCTCC
400 410 420 430 440 450 460
450 460 470 480 490 500 510 520 530
AT2G46 AAGCAGCACACATCATGAATCAGAAAACGAAGAGAACCGGAGGCGTAAACCGGAAGAGGTTAGACCGGAGATGGAGATGAA-AGA---TGAT--AAGGGT
::::: : : :::::: ::: : :: : ::: ::: ::::: :::: ::: :::: :: :
RE_01H AAGCA----AAGTGATGAAT--------GAATATTAC--------TGCACCAAAAG---------------TGGAGCTGAAGAGATATTGATGCAAAAAT
470 480 490 500 510 520 530
540 550 560 570 580 590 600 610 620
AT2G46 C-ATCATGGGGTTATGTGTGA--TCATCAT--------GATTATGAAGATGATGATAATGGTTATAG---TAACAACATCAAGAGAGAGTATTTTGGTGG
: :::: :: :: : ::::: : :::: ::::::::: :::: ::: : : : ::::: :::
RE_01H CAATCACGG------GTCCAAACTCATCGTACGGTCGAGATT----GGATGATGATGATGGATATGGGCCCACGACCATCA--------TAT--------
540 550 560 570 580 590 600
630 640 650 660 670 680 690 700 710 720
AT2G46 GTTTGAGGAAGAACCAGATCACTTAATGAACATTGTTGAACCAGCTGATAGTTGTTTGACATCATCTGATGATTGGAG-AGGTTTCAAATCAGATACTAC
:: :::: : :: : : : ::: : :: :::: : ::: ::::::: ::: :: : ::: :::::: :
RE_01H ------------CCCTCATCA--TCATCA-------TCACCCATTTCAT-GTTG--TAACA-----TGATGAT--GAGCAG--TCCAA---AGATACCAT
610 620 630 640 650 660 670
730 740 750 760 770
AT2G46 T----ACTCT----CTTGGACCAATC-CAGC-----------AACA----ATTACC---CTTGGCGGGATTTTTGGTCA
: :: :: ::: :::::: :: : :::: : :::: :::
RE_01H TGAAAACCCTGGAACTTTTCCCAATCTCATCTATCAACTCCAAACAAGACAGTACCAAACTT-----------------
680 690 700 710 720 730
10 20 30 40 50 60 70 80
AT2G46 MTEGGEYSPAMMSAEPFLTMKKMKKSNHNKNNQRRFS----------DEQIKSLEMMFESETRLEPRKKVQ-----LARELGLQPRQVAIWFQNKRARWK
: ::. :: :. : : ..: :: .. . : :::: .:: .
RE_01H -----------------------------------MSPVASTRWCPTPEQLMILEEMYRSGIRTPNAVQIQQITAHLAFYGRIEGKNVFYWFQNHKARDR
10 20 30 40 50 60
90 100 110 120 130 140 150 160 170 180
AT2G46 SKQLETEYNILRQNYDNLASQFESLKKEKQALVSELQRLKEATQKKTQEEERQCSGDQAVVALSSTHHESENEENRRRKPEEVRPEMEMKDDKGHHGVMC
: ::. :: : : ... : .::..: : : . . :: : . .: . : : : ::
RE_01H QK--------LRK---KLAKQ---LHQQQHQLQLQLQQIK---PKPISSMISQPVNKNIIDHHNPYHHHHHNHHHNHHRPYD---HMSF-DCCSHPSPMC
70 80 90 100 110 120 130 140
190 200 210 220 230 240 250
AT2G46 DHHDYEDDDNGYSNNIKREYFGGFEEEPDHLMNIVEPADSCLTSSDDWRGFKSDTTTLLDQSS----NNYPWRDFWS-----------------------
: : : : .:: .. :: .: : : :. :: :
RE_01H LPHQGT----------------GVGEAPSKVMN-------------EYYCTKSGAEEILMQKSITGPNSSYGRD-WMMMMDMGPRPSYPSSSSSPISCCN
150 160 170 180 190 200 210
AT2G46 ------------------------------
RE_01H MMMSSPKIPLKTLELFPISSINSKQDSTKL
220 230 240
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