| Code name | RE_0201 | |||
|---|---|---|---|---|
| Locus | AT1G18400 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.20%一致 | |||
| comment | 0520_20080115_0201_FR_55 | |||
| sequence |
>RE_0201_780bp ATGGCAAATTTCGAGAATCTTTCTTCTGATTTTCAGACAATAGCCATGGATATATATTCTTCCATAACTCAAGCTGCAGATCTAAACAACAACAACAGTA ACCTTCATTTTCAAACATTTCATCCTTCCTCTACTTCTCTCGAATCGCTCTTCCTTCATCATCATCAACAACAATTACTTCACTTTCCCGGAAACTCTCC AGACAGTAGTAACAATTTCTCTTCAACTTCAAGTTTCCTCCATAGTGATCACAACATCGTCGATGAGACCAAGAAGAGAAAAGCTTTGTTACCTACTTTG TCTTCATCAGAGACTAGCGGCGTCTCCGATAATACGAATGTTATTGCCACTGAAACAGGTTCTTTGAGAAGAGGTAAGAGGTTGAAGAAGAAGAAGGAAG AAGAAGACGAGAAAGAGAGAGAAGTTGTTCATGTGAGAGCCAGAAGAGGCCAAGCCACTGATAGCCACAGCTTAGCAGAACGGGTTCGGCGAGGGAAAAT AAACGAGAGATTAAGATGCTTGCAAGATATGGTGCCCGGATGTTATAGGGCTATGGGAATGGCTACGATGCTTGACGAGATAATTAATTATGTCCAGTCT CTACAGAATCAAGTCGAGTTCCTCTCGATGAAACTCACTGCAGCAAGTTCGTTTTATGACTTTAACTCAGAGACAGATGCAGTTGATTCCATGCAGAGAG CAAAGGCACGTGAGGCAGTGGAGATGGGGAGACAAACAAGAGATGGGAGTCCTGTCTTCCATTTATCAACATGGTCCCTT >RE_0201_translated MANFENLSSDFQTIAMDIYSSITQAADLNNNNSNLHFQTFHPSSTSLESLFLHHHQQQLLHFPGNSPDSSNNFSSTSSFLHSDHNIVDETKKRKALLPTL SSSETSGVSDNTNVIATETGSLRRGKRLKKKKEEEDEKEREVVHVRARRGQATDSHSLAERVRRGKINERLRCLQDMVPGCYRAMGMATMLDEIINYVQS LQNQVEFLSMKLTAASSFYDFNSETDAVDSMQRAKAREAVEMGRQTRDGSPVFHLSTWSL |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 778/780 (99.7%)（アミノ酸配列で258/260 (99.2%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT1G18 ATGGCAAATTTCGAGAATCTTTCTTCTGATTTTCAGACAATAGCCATGGATATATATTCTTCCATAACTCAAGCTGCAGATCTAAACAACAACAACAGTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_020 ATGGCAAATTTCGAGAATCTTTCTTCTGATTTTCAGACAATAGCCATGGATATATATTCTTCCATAACTCAAGCTGCAGATCTAAACAACAACAACAGTA
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT1G18 ACCTTCATTTTCAAACATTTCATCCTTCCTCTACTTCTCTCGAATCGCTCTTCCTTCATCATCATCAACAACAATTACTTCACTTTCCCGGAAACTCTCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_020 ACCTTCATTTTCAAACATTTCATCCTTCCTCTACTTCTCTCGAATCGCTCTTCCTTCATCATCATCAACAACAATTACTTCACTTTCCCGGAAACTCTCC
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT1G18 AGACAGTAGTAACAATTTCTCTTCAACTTCAAGTTTCCTCCATAGTGATCACAACATCGTCGATGAGACCAAGAAGAGAAAAGCTTTGTTACCTACTTTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_020 AGACAGTAGTAACAATTTCTCTTCAACTTCAAGTTTCCTCCATAGTGATCACAACATCGTCGATGAGACCAAGAAGAGAAAAGCTTTGTTACCTACTTTG
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT1G18 TCTTCATCAGAGACTAGCGGCGTCTCCGATAATACGAATGTTATTGCCACTGAAACAGGTTCTTTGAGAAGAGGTAAGAGGTTGAAGAAGAAGAAGGAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_020 TCTTCATCAGAGACTAGCGGCGTCTCCGATAATACGAATGTTATTGCCACTGAAACAGGTTCTTTGAGAAGAGGTAAGAGGTTGAAGAAGAAGAAGGAAG
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT1G18 AAGAAGACGAGAAAGAGAGAGAAGTTGTTCATGTGAGAGCCAGAAGAGGCCAAGCCACTGATAGCCACAGCTTAGCAGAACGGGTTCGGCGAGGGAAAAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_020 AAGAAGACGAGAAAGAGAGAGAAGTTGTTCATGTGAGAGCCAGAAGAGGCCAAGCCACTGATAGCCACAGCTTAGCAGAACGGGTTCGGCGAGGGAAAAT
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT1G18 AAACGAGAGATTAAGATGCTTGCAAGATATGGTGCCCGGATGTTATAAGGCTATGGGAATGGCTACGATGCTTGACGAGATAATTAATTATGTCCAGTCT
::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_020 AAACGAGAGATTAAGATGCTTGCAAGATATGGTGCCCGGATGTTATAGGGCTATGGGAATGGCTACGATGCTTGACGAGATAATTAATTATGTCCAGTCT
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660 670 680 690 700
AT1G18 CTACAGAATCAAGTCGAGTTCCTCTCGATGAAACTCACTGCAGCAAGTTCGTTTTATGACTTTAACTCAGAGACAGATGCAGTTGATTCCATGCAGAGAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_020 CTACAGAATCAAGTCGAGTTCCTCTCGATGAAACTCACTGCAGCAAGTTCGTTTTATGACTTTAACTCAGAGACAGATGCAGTTGATTCCATGCAGAGAG
610 620 630 640 650 660 670 680 690 700
710 720 730 740 750 760 770 780
AT1G18 CAAAGGCACGTGAGACAGTGGAGATGGGGAGACAAACAAGAGATGGGAGTCCTGTCTTCCATTTATCAACATGGTCCCTT
:::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_020 CAAAGGCACGTGAGGCAGTGGAGATGGGGAGACAAACAAGAGATGGGAGTCCTGTCTTCCATTTATCAACATGGTCCCTT
710 720 730 740 750 760 770 780
10 20 30 40 50 60 70 80 90 100
AT1G18 MANFENLSSDFQTIAMDIYSSITQAADLNNNNSNLHFQTFHPSSTSLESLFLHHHQQQLLHFPGNSPDSSNNFSSTSSFLHSDHNIVDETKKRKALLPTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_020 MANFENLSSDFQTIAMDIYSSITQAADLNNNNSNLHFQTFHPSSTSLESLFLHHHQQQLLHFPGNSPDSSNNFSSTSSFLHSDHNIVDETKKRKALLPTL
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT1G18 SSSETSGVSDNTNVIATETGSLRRGKRLKKKKEEEDEKEREVVHVRARRGQATDSHSLAERVRRGKINERLRCLQDMVPGCYKAMGMATMLDEIINYVQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::
RE_020 SSSETSGVSDNTNVIATETGSLRRGKRLKKKKEEEDEKEREVVHVRARRGQATDSHSLAERVRRGKINERLRCLQDMVPGCYRAMGMATMLDEIINYVQS
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260
AT1G18 LQNQVEFLSMKLTAASSFYDFNSETDAVDSMQRAKARETVEMGRQTRDGSPVFHLSTWSL
:::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::
RE_020 LQNQVEFLSMKLTAASSFYDFNSETDAVDSMQRAKAREAVEMGRQTRDGSPVFHLSTWSL
210 220 230 240 250 260
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