◆◆◆RE_0223 detail◆◆◆

Code name	RE_0223
Locus	AT2G20180
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.80%一致
comment	0422_アミノ酸配列70%以上一致
sequence	>RE_0223_1221bp ATGGATCCTCAGCAGCAACCTTCTTCAGATCAGAATCTTTTTATTCAAGAAGATGAAATGACTTCTTGGCTTCATTATCCTCTCCGTGACGATGATTTCT GCTCAGATCTTCTCTTCTCCGCCGCACCTACTGCGACGGCTACCGCGACGGTGAGTCAAGTCACCGCCGCGAGACCGCCAGTATCTTCGACGAATGAGTC GAGGCCGCCGGTGAGGAACTTCATGAATTTCTCGAGGCTGAGAGGGGATTTTAATAACGGTAGAGGTGGTGAATCTGGACCGTTGCTTTCGAAGGCGGTT GTGAGAGAATCTACGCAGGTAAGTCCTAGCGCAACACCGTCGGCGGCGGCGAGTGAATCCGGTTTAACACGGCGGACGGATGGTACTGACAGTTCCGCCG TAGCTGGAGGCGGCGCGTACAATCGGAAGGGAAAAGCAGTGGCTATGACGGCGCCGGCGATCGAGATAACCGGTACATCGTCATCTGTAGTGTCAAAGAG CGAAATCGAACCGGAGAAGACGAACGTCGATGATAGGAAACGAAAAGAGAGAGAAGCCACCACTACTGATGAAACTGAATCCCGTAGCGAGGAAACAAAA CAAGCACGTGTATCAACAACATCTACCAAGAGATCTCGTGCTGCTGAAGTTCATAATCTCTCTGAAAGAAAACGGAGAGATAGGATCAATGAGAGAATGA AAGCTTTGCAAGGACTTATACCTCGCTGCAACAAGTCAGATAAAGCTTCGATGCTAGATGAAGCTATTGAGTACATGAAATCTCTTCAGCTTCAAATACA GATGATGTCAATGGGATGTGGAATGATGCCAATGATGTATCCGGGCATGCAACAGTACATGCCTCATATGGCGATGGGTATGGGTATGAACCAGCCTATT CCTCCTCCTTCCTTCATGCCATTCCCCAACATGTTAGCCGCTCAAAGACCTTTGCCTACACAAACTCACATGGCCGGGTCAGGACCGCAATACCCTGTTC ATGCTTCTGACCCGTCAAGAGTCTTTGTACCGAACCAGCAGTATGATCCAACCTCGGGCCAGCCTCAGTATCCGGCTGGTTACACGGATCCATATCAGCA GTTCCGCGGTCTCCACCCGACCCAACCACCTCAGTTTCAGAATCAAGCAACATCATACCCAAGTTCGAGCAGGGTGAGTAGTAGTAAGGAATCTGAGGAT CACGGAAACCACACAACAGGT >RE_0223_translated MDPQQQPSSDQNLFIQEDEMTSWLHYPLRDDDFCSDLLFSAAPTATATATVSQVTAARPPVSSTNESRPPVRNFMNFSRLRGDFNNGRGGESGPLLSKAV VRESTQVSPSATPSAAASESGLTRRTDGTDSSAVAGGGAYNRKGKAVAMTAPAIEITGTSSSVVSKSEIEPEKTNVDDRKRKEREATTTDETESRSEETK QARVSTTSTKRSRAAEVHNLSERKRRDRINERMKALQGLIPRCNKSDKASMLDEAIEYMKSLQLQIQMMSMGCGMMPMMYPGMQQYMPHMAMGMGMNQPI PPPSFMPFPNMLAAQRPLPTQTHMAGSGPQYPVHASDPSRVFVPNQQYDPTSGQPQYPAGYTDPYQQFRGLHPTQPPQFQNQATSYPSSSRVSSSKESED HGNHTTG
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1217/1221 (99.7%)（アミノ酸配列で406/407 (99.8%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT2G20 ATGGATCCTCAGCAGCAACCTTCTTCAGATCAGAATCTTTTTATTCAAGAAGATGAAATGACTTCTTGGCTTCATTATCCTCTCCGTGACGATGATTTCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_022 ATGGATCCTCAGCAGCAACCTTCTTCAGATCAGAATCTTTTTATTCAAGAAGATGAAATGACTTCTTGGCTTCATTATCCTCTCCGTGACGATGATTTCT 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT2G20 GCTCAGATCTTCTCTTCTCCGCCGCACCTACTGCGACGGCTACCGCGACGGTGAGTCAAGTCACCGCCGCGAGACCGCCAGTATCTTCGACGAATGAGTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_022 GCTCAGATCTTCTCTTCTCCGCCGCACCTACTGCGACGGCTACCGCGACGGTGAGTCAAGTCACCGCCGCGAGACCGCCAGTATCTTCGACGAATGAGTC 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT2G20 GAGGCCGCCGGTGAGGAACTTCATGAATTTCTCGAGGCTGAGAGGGGATTTTAATAACGGTAGAGGTGGTGAATCTGGACCGTTGCTTTCGAAGGCGGTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_022 GAGGCCGCCGGTGAGGAACTTCATGAATTTCTCGAGGCTGAGAGGGGATTTTAATAACGGTAGAGGTGGTGAATCTGGACCGTTGCTTTCGAAGGCGGTT 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT2G20 GTGAGAGAATCTACGCAGGTAAGTCCTAGCGCAACACCGTCGGCGGCGGCGAGTGAATCCGGTTTAACACGGCGGACGGATGGTACTGACAGTTCCGCCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_022 GTGAGAGAATCTACGCAGGTAAGTCCTAGCGCAACACCGTCGGCGGCGGCGAGTGAATCCGGTTTAACACGGCGGACGGATGGTACTGACAGTTCCGCCG 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT2G20 TAGCTGGAGGCGGCGCGTATAATCGGAAGGGAAAAGCAGTGGCTATGACGGCGCCGGCGATCGAGATAACCGGTACATCGTCATCTGTAGTGTCAAAGAG ::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_022 TAGCTGGAGGCGGCGCGTACAATCGGAAGGGAAAAGCAGTGGCTATGACGGCGCCGGCGATCGAGATAACCGGTACATCGTCATCTGTAGTGTCAAAGAG 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT2G20 CGAAATCGAACCGGAGAAGACGAACGTCGATGATAGGAAACGAAAAGAGAGAGAAGCCACCACTACTGATGAAACTGAATCCCGTAGCGAGGAAACAAAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_022 CGAAATCGAACCGGAGAAGACGAACGTCGATGATAGGAAACGAAAAGAGAGAGAAGCCACCACTACTGATGAAACTGAATCCCGTAGCGAGGAAACAAAA 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT2G20 CAAGCACGTGTATCAACAACATCTACCAAGAGATCTCGTGCTGCTGAAGTTCATAATCTCTCTGAAAGAAAACGGAGAGATAGGATCAATGAGAGAATGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_022 CAAGCACGTGTATCAACAACATCTACCAAGAGATCTCGTGCTGCTGAAGTTCATAATCTCTCTGAAAGAAAACGGAGAGATAGGATCAATGAGAGAATGA 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT2G20 AAGCTTTGCAAGAACTTATACCTCGCTGCAACAAGTCAGATAAAGCTTCGATGCTAGATGAAGCTATTGAGTACATGAAATCTCTTCAGCTTCAAATACA :::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_022 AAGCTTTGCAAGGACTTATACCTCGCTGCAACAAGTCAGATAAAGCTTCGATGCTAGATGAAGCTATTGAGTACATGAAATCTCTTCAGCTTCAAATACA 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT2G20 GATGATGTCAATGGGATGTGGAATGATGCCAATGATGTATCCGGGCATGCAACAGTACATGCCTCATATGGCGATGGGTATGGGTATGAACCAGCCTATT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_022 GATGATGTCAATGGGATGTGGAATGATGCCAATGATGTATCCGGGCATGCAACAGTACATGCCTCATATGGCGATGGGTATGGGTATGAACCAGCCTATT 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT2G20 CCTCCTCCTTCCTTCATGCCATTCCCCAACATGTTAGCCGCTCAAAGACCTTTGCCTACACAAACTCACATGGCCGGGTCAGGACCGCAATACCCTGTTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_022 CCTCCTCCTTCCTTCATGCCATTCCCCAACATGTTAGCCGCTCAAAGACCTTTGCCTACACAAACTCACATGGCCGGGTCAGGACCGCAATACCCTGTTC 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT2G20 ATGCTTCTGACCCGTCAAGAGTCTTTGTACCGAACCAGCAGTATGATCCAACCTCGGGCCAGCCTCAGTATCCAGCTGGTTACACGGATCCATATCAGCA ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::: RE_022 ATGCTTCTGACCCGTCAAGAGTCTTTGTACCGAACCAGCAGTATGATCCAACCTCGGGCCAGCCTCAGTATCCGGCTGGTTACACGGATCCATATCAGCA 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT2G20 GTTCCGCGGTCTCCACCCGACCCAACCACCTCAGTTTCAGAATCAAGCAACATCGTACCCAAGTTCGAGCAGGGTGAGTAGTAGTAAGGAATCTGAGGAT :::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::: RE_022 GTTCCGCGGTCTCCACCCGACCCAACCACCTCAGTTTCAGAATCAAGCAACATCATACCCAAGTTCGAGCAGGGTGAGTAGTAGTAAGGAATCTGAGGAT 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 AT2G20 CACGGAAACCACACAACAGGT ::::::::::::::::::::: RE_022 CACGGAAACCACACAACAGGT 1210 1220 10 20 30 40 50 60 70 80 90 100 AT2G20 MDPQQQPSSDQNLFIQEDEMTSWLHYPLRDDDFCSDLLFSAAPTATATATVSQVTAARPPVSSTNESRPPVRNFMNFSRLRGDFNNGRGGESGPLLSKAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_022 MDPQQQPSSDQNLFIQEDEMTSWLHYPLRDDDFCSDLLFSAAPTATATATVSQVTAARPPVSSTNESRPPVRNFMNFSRLRGDFNNGRGGESGPLLSKAV 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT2G20 VRESTQVSPSATPSAAASESGLTRRTDGTDSSAVAGGGAYNRKGKAVAMTAPAIEITGTSSSVVSKSEIEPEKTNVDDRKRKEREATTTDETESRSEETK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_022 VRESTQVSPSATPSAAASESGLTRRTDGTDSSAVAGGGAYNRKGKAVAMTAPAIEITGTSSSVVSKSEIEPEKTNVDDRKRKEREATTTDETESRSEETK 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT2G20 QARVSTTSTKRSRAAEVHNLSERKRRDRINERMKALQELIPRCNKSDKASMLDEAIEYMKSLQLQIQMMSMGCGMMPMMYPGMQQYMPHMAMGMGMNQPI ::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_022 QARVSTTSTKRSRAAEVHNLSERKRRDRINERMKALQGLIPRCNKSDKASMLDEAIEYMKSLQLQIQMMSMGCGMMPMMYPGMQQYMPHMAMGMGMNQPI 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT2G20 PPPSFMPFPNMLAAQRPLPTQTHMAGSGPQYPVHASDPSRVFVPNQQYDPTSGQPQYPAGYTDPYQQFRGLHPTQPPQFQNQATSYPSSSRVSSSKESED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_022 PPPSFMPFPNMLAAQRPLPTQTHMAGSGPQYPVHASDPSRVFVPNQQYDPTSGQPQYPAGYTDPYQQFRGLHPTQPPQFQNQATSYPSSSRVSSSKESED 310 320 330 340 350 360 370 380 390 400 AT2G20 HGNHTTG ::::::: RE_022 HGNHTTG

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