◆◆◆RE_0227 detail◆◆◆

Code name	RE_0227
Locus	AT2G31210
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.50%一致
comment	0422_アミノ酸配列70%以上一致
sequence	>RE_0227_1284bp ATGTATGAGGAAAGTTCATGTTTTGATCCTAATTCGATGGTGGACAACAACGGCGGCTTCTGTGCGGCGGAAACAACTTTTACGGTAAGCCACCAGTTTC AACCACCGCTTGGAAGCACAACAAACAGCTTTGATGACGATCTTAAGCTCCCAACAATGGATGAGTTCTCTGTTTTCCCTTCTGTTATCTCTCTCCCAAA CTCAGAAACTCAGAACCAAAACATCAGCAACAACAACCATTTGATCAACCAAATGATTCAAGAATCGAATTGGGGTGTTTCTGAAGACAACTCTAATTTC TTCATGAACACTTCACATCCAAACACAACAACAACTCCAATCCCTGATCTTCTCAGCCTCTTGCATTTGCCTAGATGCTCTATGTCATTACCAAGCTCTG ATATAATGGCGGGTTCTTGCTTCACGTATGACCCGCTCTTTCACTTAAACCTTCCTCCACAACCTCCATTGATCCCTTCTAATGACTACTCAGGGTACTT GCTTGGTATTGATACCAATACTACTACTCAAAGAGATGAGTCTAATGTTGGAGATGAAAATAACAATGCTCAGTTTGATAGCGGAATCATCGAGTTTAGC AAAGAGATTAGGCGTAAAGGAAGAGGGAAGCGAAAGAACAAACCTTTTACTACAGAACGTGAGCGAAGATGTCACTTGAATGAGCGGTACGAGGCCTTGA AATTGCTCATTCCTAGCCCGAGTAAGGGAGATAGAGCATCAATTCTTCAAGATGGAATCGATTACATCAACGAGTTACGCAGAAGAGTAAGTGAGCTTAA GTATTTGGTAGAGAGGAAGAGATGTGGTGGGAGACACATGAACAATGAAGTAGACGACAACGATAACAACAAAAACTTGGATGATCATGGTAATGAAGAT GATGATGATGATGATGAAAACATGGAGAAGAAGCCGGAGAGCGATGTAATAGACCAATGTTCAAGCAACAACTCGCTGAGATGTTCATGGCTGCAGAGGA AATCAAAAGTAACAGAAGTTGATGTTAGGATTGTTGATGATGAAGTAACAATCAAAGTTGTTCAGAAGAAGAAGATCAATTGTTTGTTACTTGTCTCCAA AGTACTTGATCAGCTTCAGCTTGATCTTCACCATGTTGCCGGAGGACAGATTGGTGAGCATTACAGTTTCTTGTTCAACACCAAGATATATGAAGGATCA ACAATATATGCAAGTGCAATAGCAAACAGAGTGATTGAAGTTGTGGATAAACACTACATGGCTTCTCTTCCCAACAGTAACTAT >RE_0227_translated MYEESSCFDPNSMVDNNGGFCAAETTFTVSHQFQPPLGSTTNSFDDDLKLPTMDEFSVFPSVISLPNSETQNQNISNNNHLINQMIQESNWGVSEDNSNF FMNTSHPNTTTTPIPDLLSLLHLPRCSMSLPSSDIMAGSCFTYDPLFHLNLPPQPPLIPSNDYSGYLLGIDTNTTTQRDESNVGDENNNAQFDSGIIEFS KEIRRKGRGKRKNKPFTTERERRCHLNERYEALKLLIPSPSKGDRASILQDGIDYINELRRRVSELKYLVERKRCGGRHMNNEVDDNDNNKNLDDHGNED DDDDDENMEKKPESDVIDQCSSNNSLRCSWLQRKSKVTEVDVRIVDDEVTIKVVQKKKINCLLLVSKVLDQLQLDLHHVAGGQIGEHYSFLFNTKIYEGS TIYASAIANRVIEVVDKHYMASLPNSNY
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1282/1284 (99.8%)（アミノ酸配列で426/428 (99.5%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT2G31 ATGTATGAGGAAAGTTCATGTTTTGATCCTAATTCGATGGTGGACAACAACGGCGGCTTCTGTGCGGCGGAAACAACTTTTACGGTAAGCCACCAGTTTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_022 ATGTATGAGGAAAGTTCATGTTTTGATCCTAATTCGATGGTGGACAACAACGGCGGCTTCTGTGCGGCGGAAACAACTTTTACGGTAAGCCACCAGTTTC 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT2G31 AACCACCGCTTGGAAGCACAACAAACAGCTTTGATGACGATCTTAAGCTCCCAACAATGGATGAGTTCTCTGTTTTCCCTTCTGTTATCTCTCTCCCAAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_022 AACCACCGCTTGGAAGCACAACAAACAGCTTTGATGACGATCTTAAGCTCCCAACAATGGATGAGTTCTCTGTTTTCCCTTCTGTTATCTCTCTCCCAAA 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT2G31 CTCAGAAACTCAGAACCAAAACATCAGCAACAACAACCATTTGATCAACCAAATGATTCAAGAATCGAATTGGGGTGTTTCTGAAGACAACTCTAATTTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_022 CTCAGAAACTCAGAACCAAAACATCAGCAACAACAACCATTTGATCAACCAAATGATTCAAGAATCGAATTGGGGTGTTTCTGAAGACAACTCTAATTTC 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT2G31 TTCATGAACACTTCACATCCAAACACAACAACAACTCCAATCCCTGATCTTCTCAGCCTCTTGCATTTGCCTAGATGCTCTATGTCATTACCAAGCTCTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_022 TTCATGAACACTTCACATCCAAACACAACAACAACTCCAATCCCTGATCTTCTCAGCCTCTTGCATTTGCCTAGATGCTCTATGTCATTACCAAGCTCTG 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT2G31 ATATAATGGCGGGTTCTTGCTTCACGTATGACCCGCTCTTTCACTTAAACCTTCCTCCACAACCTCCATTGATCCCTTCTAATGACTACTCAGGGTACTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_022 ATATAATGGCGGGTTCTTGCTTCACGTATGACCCGCTCTTTCACTTAAACCTTCCTCCACAACCTCCATTGATCCCTTCTAATGACTACTCAGGGTACTT 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT2G31 GCTTGGTATTGATACCAATACTACTACTCAAAGAGATGAGTCTAATGTTGGAGATGAAAATAACAATGCTCAGTTTGATAGCGGAATCATCGAGTTTAGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_022 GCTTGGTATTGATACCAATACTACTACTCAAAGAGATGAGTCTAATGTTGGAGATGAAAATAACAATGCTCAGTTTGATAGCGGAATCATCGAGTTTAGC 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT2G31 AAAGAGATTAGGCGTAAAGGAAGAGGGAAGCGAAAGAACAAACCTTTTACTACAGAACGTGAGCGAAGATGTCACTTGAATGAGCGGTACGAGGCCTTGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_022 AAAGAGATTAGGCGTAAAGGAAGAGGGAAGCGAAAGAACAAACCTTTTACTACAGAACGTGAGCGAAGATGTCACTTGAATGAGCGGTACGAGGCCTTGA 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT2G31 AATTGCTCATTCCTAGCCCGAGTAAGGGAGATAGAGCATCAATTCTTCAAGATGGAATCGATTACATCAACGAGTTACGCAGAAGAGTAAGTGAGCTTAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_022 AATTGCTCATTCCTAGCCCGAGTAAGGGAGATAGAGCATCAATTCTTCAAGATGGAATCGATTACATCAACGAGTTACGCAGAAGAGTAAGTGAGCTTAA 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT2G31 GTATTTGGTAGAGAGGAAGAGATGTGGTGGGAGACACAAGAACAATGAAGTAGACGACAACAATAACAACAAAAACTTGGATGATCATGGTAATGAAGAT :::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::: RE_022 GTATTTGGTAGAGAGGAAGAGATGTGGTGGGAGACACATGAACAATGAAGTAGACGACAACGATAACAACAAAAACTTGGATGATCATGGTAATGAAGAT 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT2G31 GATGATGATGATGATGAAAACATGGAGAAGAAGCCGGAGAGCGATGTAATAGACCAATGTTCAAGCAACAACTCGCTGAGATGTTCATGGCTGCAGAGGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_022 GATGATGATGATGATGAAAACATGGAGAAGAAGCCGGAGAGCGATGTAATAGACCAATGTTCAAGCAACAACTCGCTGAGATGTTCATGGCTGCAGAGGA 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT2G31 AATCAAAAGTAACAGAAGTTGATGTTAGGATTGTTGATGATGAAGTAACAATCAAAGTTGTTCAGAAGAAGAAGATCAATTGTTTGTTACTTGTCTCCAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_022 AATCAAAAGTAACAGAAGTTGATGTTAGGATTGTTGATGATGAAGTAACAATCAAAGTTGTTCAGAAGAAGAAGATCAATTGTTTGTTACTTGTCTCCAA 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT2G31 AGTACTTGATCAGCTTCAGCTTGATCTTCACCATGTTGCCGGAGGACAGATTGGTGAGCATTACAGTTTCTTGTTCAACACCAAGATATATGAAGGATCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_022 AGTACTTGATCAGCTTCAGCTTGATCTTCACCATGTTGCCGGAGGACAGATTGGTGAGCATTACAGTTTCTTGTTCAACACCAAGATATATGAAGGATCA 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 AT2G31 ACAATATATGCAAGTGCAATAGCAAACAGAGTGATTGAAGTTGTGGATAAACACTACATGGCTTCTCTTCCCAACAGTAACTAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_022 ACAATATATGCAAGTGCAATAGCAAACAGAGTGATTGAAGTTGTGGATAAACACTACATGGCTTCTCTTCCCAACAGTAACTAT 1210 1220 1230 1240 1250 1260 1270 1280 10 20 30 40 50 60 70 80 90 100 AT2G31 MYEESSCFDPNSMVDNNGGFCAAETTFTVSHQFQPPLGSTTNSFDDDLKLPTMDEFSVFPSVISLPNSETQNQNISNNNHLINQMIQESNWGVSEDNSNF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_022 MYEESSCFDPNSMVDNNGGFCAAETTFTVSHQFQPPLGSTTNSFDDDLKLPTMDEFSVFPSVISLPNSETQNQNISNNNHLINQMIQESNWGVSEDNSNF 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT2G31 FMNTSHPNTTTTPIPDLLSLLHLPRCSMSLPSSDIMAGSCFTYDPLFHLNLPPQPPLIPSNDYSGYLLGIDTNTTTQRDESNVGDENNNAQFDSGIIEFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_022 FMNTSHPNTTTTPIPDLLSLLHLPRCSMSLPSSDIMAGSCFTYDPLFHLNLPPQPPLIPSNDYSGYLLGIDTNTTTQRDESNVGDENNNAQFDSGIIEFS 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT2G31 KEIRRKGRGKRKNKPFTTERERRCHLNERYEALKLLIPSPSKGDRASILQDGIDYINELRRRVSELKYLVERKRCGGRHKNNEVDDNNNNKNLDDHGNED ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::.:::::::::::: RE_022 KEIRRKGRGKRKNKPFTTERERRCHLNERYEALKLLIPSPSKGDRASILQDGIDYINELRRRVSELKYLVERKRCGGRHMNNEVDDNDNNKNLDDHGNED 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT2G31 DDDDDENMEKKPESDVIDQCSSNNSLRCSWLQRKSKVTEVDVRIVDDEVTIKVVQKKKINCLLLVSKVLDQLQLDLHHVAGGQIGEHYSFLFNTKIYEGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_022 DDDDDENMEKKPESDVIDQCSSNNSLRCSWLQRKSKVTEVDVRIVDDEVTIKVVQKKKINCLLLVSKVLDQLQLDLHHVAGGQIGEHYSFLFNTKIYEGS 310 320 330 340 350 360 370 380 390 400 410 420 AT2G31 TIYASAIANRVIEVVDKHYMASLPNSNY :::::::::::::::::::::::::::: RE_022 TIYASAIANRVIEVVDKHYMASLPNSNY 410 420

このページのTOPに戻る