◆◆◆RE_0232 detail◆◆◆

Code name	RE_0232
Locus	AT2G42280
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.40%一致
comment	0115_アミノ酸配列70%以上一致/0420_アミノ酸配列70%以上一致
sequence	>RE_0232_1077bp ATGGATTCAAATAATCATCTCTACGACCCGAATCCCACCGGGTCGGGTCTTCTTCGTTTTAGATCAGCTCCGAGCTCTGTTCTCGCCGCTTTTGTTGACG ACGACAAGATTGGTTTCGACTCCGATAGGTTGCTTTCAAGATTCGTGACCTCTAATGGCGTTAACGGAGATCTGGGTTCACCTAAATTCGAGGATAAGTC TCCGGTTTCGTTAACGAACACCTCTGTTTCATACGCCGCCACTCTGCCGCCACCGCCGCAGCTTGAGCCGTCGAGTTTTCTGGGTTTGCCGCCGCATTAC CCGAGGCAGAGTAAAGGGATAATGAACTCGGTTGGTTTGGATCAGTTTCCCGGTATCAATAATCATCACACCAAACCAGTTGAATCTAATTTTCTCCGTC AAAGCAGCTCTCCAGCCGGAATGTTTACTAATCTCTCTGACCAAAACGGTTATGGTTCAATGAGGAATTTGATGAATTACGAAGAAGATGAAGAGAGTCC ATCTAATTCCAATGGATTAAGACGCCATTGCAGTCTCTCTTCAAGGCCACCTTCTTCACTTGGAATGCTTTCTCAAATACCTGAAATCGCACCCGAAACT AATTTTCCATATAGCCATTGGAATGATCCATCCAGCTTTATTGATAACTTATCCTCACTTAAAAGAGAAGCCGAGGACGATGGAAAATTGTTTCTCGGAG CTCAGAACGGAGAGTCCGGGAATCGTATGCAGTTACTGTCGCATCATTTGAGCCTACCAAAGTCATCATCGACAGCCTCGGACATGGTTTCAGTGGATAA GTATCTTCAGCTACAAGATTCTGTTCCTTGTAAAATCAGAGCCAAACGTGGTTGCGCTACACATCCTCGAAGCATCGCTGAACGGGTAAGAAGAACGCGG ATAAGCGAGCGAATGAGGAAGTTACAAGAGCTTGTTCCTAACATGGACAAGCAAACCAACACTTCGGATATGTTGGATTTAGCTGTGGATTACATCAAAG ATTTACAAAGACAGTATAAGATTTTAAACGACAACAGAGCTAACTGTAAGTGTATGAACAAGGAGAAGAAGTCAATA >RE_0232_translated MDSNNHLYDPNPTGSGLLRFRSAPSSVLAAFVDDDKIGFDSDRLLSRFVTSNGVNGDLGSPKFEDKSPVSLTNTSVSYAATLPPPPQLEPSSFLGLPPHY PRQSKGIMNSVGLDQFPGINNHHTKPVESNFLRQSSSPAGMFTNLSDQNGYGSMRNLMNYEEDEESPSNSNGLRRHCSLSSRPPSSLGMLSQIPEIAPET NFPYSHWNDPSSFIDNLSSLKREAEDDGKLFLGAQNGESGNRMQLLSHHLSLPKSSSTASDMVSVDKYLQLQDSVPCKIRAKRGCATHPRSIAERVRRTR ISERMRKLQELVPNMDKQTNTSDMLDLAVDYIKDLQRQYKILNDNRANCKCMNKEKKSI
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1075/1077 (99.8%)（アミノ酸配列で357/359 (99.4%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT2G42 ATGGATTCAAATAATCATCTCTACGACCCGAATCCCACCGGGTCGGGTCTTCTTCGTTTTAGATCAGCTCCGAGCTCTGTTCTCGCCGCTTTTGTTGACG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_023 ATGGATTCAAATAATCATCTCTACGACCCGAATCCCACCGGGTCGGGTCTTCTTCGTTTTAGATCAGCTCCGAGCTCTGTTCTCGCCGCTTTTGTTGACG 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT2G42 ACGACAAGATTGGTTTCGACTCCGATAGGTTGCTTTCAAGATTCGTGACCTCTAATGGCGTTAACGGAGATCTGGGTTCACCTAAATTCGAGGATAAGTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_023 ACGACAAGATTGGTTTCGACTCCGATAGGTTGCTTTCAAGATTCGTGACCTCTAATGGCGTTAACGGAGATCTGGGTTCACCTAAATTCGAGGATAAGTC 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT2G42 TCCGGTTTCGTTAACGAACACCTCTGTTTCATACGCCGCCACTCTGCCGCCACCGCCGCAGCTTGAGCCGTCGAGTTTTCTGGGTTTGCCGCCGCATTAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_023 TCCGGTTTCGTTAACGAACACCTCTGTTTCATACGCCGCCACTCTGCCGCCACCGCCGCAGCTTGAGCCGTCGAGTTTTCTGGGTTTGCCGCCGCATTAC 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT2G42 CCGAGGCAGAGTAAAGGGATAATGAACTCGGTTGGTTTGGATCAGTTTCTCGGTATCAATAATCATCACACCAAACCAGTTGAATCTAATCTTCTCCGTC ::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::: ::::::::: RE_023 CCGAGGCAGAGTAAAGGGATAATGAACTCGGTTGGTTTGGATCAGTTTCCCGGTATCAATAATCATCACACCAAACCAGTTGAATCTAATTTTCTCCGTC 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT2G42 AAAGCAGCTCTCCAGCCGGAATGTTTACTAATCTCTCTGACCAAAACGGTTATGGTTCAATGAGGAATTTGATGAATTACGAAGAAGATGAAGAGAGTCC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_023 AAAGCAGCTCTCCAGCCGGAATGTTTACTAATCTCTCTGACCAAAACGGTTATGGTTCAATGAGGAATTTGATGAATTACGAAGAAGATGAAGAGAGTCC 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT2G42 ATCTAATTCCAATGGATTAAGACGCCATTGCAGTCTCTCTTCAAGGCCACCTTCTTCACTTGGAATGCTTTCTCAAATACCTGAAATCGCACCCGAAACT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_023 ATCTAATTCCAATGGATTAAGACGCCATTGCAGTCTCTCTTCAAGGCCACCTTCTTCACTTGGAATGCTTTCTCAAATACCTGAAATCGCACCCGAAACT 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT2G42 AATTTTCCATATAGCCATTGGAATGATCCATCCAGCTTTATTGATAACTTATCCTCACTTAAAAGAGAAGCCGAGGACGATGGAAAATTGTTTCTCGGAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_023 AATTTTCCATATAGCCATTGGAATGATCCATCCAGCTTTATTGATAACTTATCCTCACTTAAAAGAGAAGCCGAGGACGATGGAAAATTGTTTCTCGGAG 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT2G42 CTCAGAACGGAGAGTCCGGGAATCGTATGCAGTTACTGTCGCATCATTTGAGCCTACCAAAGTCATCATCGACAGCCTCGGACATGGTTTCAGTGGATAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_023 CTCAGAACGGAGAGTCCGGGAATCGTATGCAGTTACTGTCGCATCATTTGAGCCTACCAAAGTCATCATCGACAGCCTCGGACATGGTTTCAGTGGATAA 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT2G42 GTATCTTCAGCTACAAGATTCTGTTCCTTGTAAAATCAGAGCCAAACGTGGTTGCGCTACACATCCTCGAAGCATCGCTGAACGGGTAAGAAGAACGCGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_023 GTATCTTCAGCTACAAGATTCTGTTCCTTGTAAAATCAGAGCCAAACGTGGTTGCGCTACACATCCTCGAAGCATCGCTGAACGGGTAAGAAGAACGCGG 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT2G42 ATAAGCGAGCGAATGAGGAAGTTACAAGAGCTTGTTCCTAACATGGACAAGCAAACCAACACTTCGGATATGTTGGATTTAGCTGTGGATTACATCAAAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_023 ATAAGCGAGCGAATGAGGAAGTTACAAGAGCTTGTTCCTAACATGGACAAGCAAACCAACACTTCGGATATGTTGGATTTAGCTGTGGATTACATCAAAG 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 AT2G42 ATTTACAAAGACAGTATAAGATTTTAAACGACAACAGAGCTAACTGTAAGTGTATGAACAAGGAGAAGAAGTCAATA ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_023 ATTTACAAAGACAGTATAAGATTTTAAACGACAACAGAGCTAACTGTAAGTGTATGAACAAGGAGAAGAAGTCAATA 1010 1020 1030 1040 1050 1060 1070 10 20 30 40 50 60 70 80 90 100 AT2G42 MDSNNHLYDPNPTGSGLLRFRSAPSSVLAAFVDDDKIGFDSDRLLSRFVTSNGVNGDLGSPKFEDKSPVSLTNTSVSYAATLPPPPQLEPSSFLGLPPHY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_023 MDSNNHLYDPNPTGSGLLRFRSAPSSVLAAFVDDDKIGFDSDRLLSRFVTSNGVNGDLGSPKFEDKSPVSLTNTSVSYAATLPPPPQLEPSSFLGLPPHY 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT2G42 PRQSKGIMNSVGLDQFLGINNHHTKPVESNLLRQSSSPAGMFTNLSDQNGYGSMRNLMNYEEDEESPSNSNGLRRHCSLSSRPPSSLGMLSQIPEIAPET :::::::::::::::: ::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_023 PRQSKGIMNSVGLDQFPGINNHHTKPVESNFLRQSSSPAGMFTNLSDQNGYGSMRNLMNYEEDEESPSNSNGLRRHCSLSSRPPSSLGMLSQIPEIAPET 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT2G42 NFPYSHWNDPSSFIDNLSSLKREAEDDGKLFLGAQNGESGNRMQLLSHHLSLPKSSSTASDMVSVDKYLQLQDSVPCKIRAKRGCATHPRSIAERVRRTR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_023 NFPYSHWNDPSSFIDNLSSLKREAEDDGKLFLGAQNGESGNRMQLLSHHLSLPKSSSTASDMVSVDKYLQLQDSVPCKIRAKRGCATHPRSIAERVRRTR 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 AT2G42 ISERMRKLQELVPNMDKQTNTSDMLDLAVDYIKDLQRQYKILNDNRANCKCMNKEKKSI ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_023 ISERMRKLQELVPNMDKQTNTSDMLDLAVDYIKDLQRQYKILNDNRANCKCMNKEKKSI 310 320 330 340 350

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